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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCCGGCGCCGGTGCACACTACTCCGCCCGTACCGCGGAGGAAGTCTTCCGCGATTTCCGCGGCCGCCGCGCGGGCATGATCAAGGCCCTCACCAACGgtatgctaccatcgctcgctccgttgttccggatttcgcttgcttatctggcggcttcgccggtgctgacgtattatttggtttggtggtttgcgcag

Basic information

species Zea mays
transcript GRMZM2G016817_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G016817_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g34640.1 (Oryza sativa), 5'ss of exon 1
GACCCCGGCGCCGGTGCACACTACTCCGCCCGTACCGCGGAGGAAGTCTTCCGCGATTTCCGCGGCCGCCGCGCGGGCATGATCAAGGCCCTCACCAACGgtatgctaccatcgctcgctccgttgttccggatttcgcttgcttatctggcggcttcgccggtgctgacgtattatttggt-ttggtggtttgcgcag-----------------------------------------------
|||   ||| |||| |  |  ||| || |||| || || ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||  ||  |  | | | |  |    | |||  |      || ||| ||  ||| || || | || |       |   || | | | ||   |||   |                                               
GACGGAGGCTCCGGGGGGCCGTACACCTCCCGCACGGCCGAGGAGGTCTTCCGCGACTTCCGCGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACCGgtaatctctccccccgcccctctccctcccgcttccttactg-ttagcttccggatttgc-gctgttcggtctctccctgatgtcgctgacgtgcctcgttgctgcccggcttggggctggtgtgttgttttctttttgtgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211445818|gb|FL055675.1|FL055675
EST:     CCGCGATTTCCGCGGCCGCCGCGCGGGCATGATCAAGGCCCTCACCAACG                         ATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG
genomic: CCGCGATTTCCGCGGCCGCCGCGCGGGCATGATCAAGGCCCTCACCAACGgtatgctacc ... gtttgcgcagATGTGGAGAAGTTCTACCAGCTGTGCGACCCCG