1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCCCTTCTCCTCCTCGCGGCTCCCCAAGCTCCTGCTCCGCGCGCGTAGCCGCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccccggttctgttctgctgctccccggcgcggatcgtttgttagtgtttgtttcttgagccttctggtttgttctgcttttcctccattcttt...
species | Zea mays |
transcript | GRMZM2G016184_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|211114299|gb|FL364736.1|FL364736
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCAYCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATSACTGCTTACAAGTATCAAGEST: gi|211099206|gb|FL356886.1|FL356886
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGK-ACCTCCCAGKCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCCGGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAEST: gi|211446537|gb|FL323006.1|FL323006
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACC-G-TGAAGATGGCGGCGATGACTGCTTACAAGTATCA
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|211179443|gb|FL364371.1|FL364371
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|211370346|gb|FL342982.1|FL342982
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|211367569|gb|FL335348.1|FL335348
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTWTCAAGEST: gi|211430478|gb|FL350076.1|FL350076
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|211224648|gb|FL333450.1|FL333450
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGEST: gi|44681921|gb|CK786969.1|CK786969
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAG
EST: GCGCGGCACCTCCCAGTCCCAACACCCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|76293603|gb|DV033171.1|DV033171
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|211134109|gb|FL315814.1|FL315814
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|148947020|gb|EC892317.2|EC892317
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|76286797|gb|DV026365.1|DV026365
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|211200884|gb|FL351309.1|FL351309
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|50322746|gb|CO517872.1|CO517872
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|50338098|gb|CO533224.1|CO533224
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|211235414|gb|FL352706.1|FL352706
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|148953653|gb|EC899012.2|EC899012
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|211176856|gb|FL323774.1|FL323774
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAGEST: gi|76280960|gb|DV020528.1|DV020528
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
EST: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAG GTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
genomic: GCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccc ... ggtggtgcagGTGCTGTTTGAACCGTGAAGATGGCGGCGATGACTGCTTACAAGTATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCTTCTCCTCCTCGCGGCTCCCCAAGCTCCTGCTCCGCGCGCGTAGCCGCGCGGCACCTCCCAGTCCCAACACGCCCGCAAGCTCCGCTCACCGCGAGgtaatatccccggttctgttctgctgctccccggcgcggatcgtttgttagtgtttgtttcttgagccttctggtttgttctgcttttcctccattcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccggc