Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCCTGTCAGGCCGCGACGTAGCCCTCCTCCTCTTGCTCTCCCCGCCATCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagaccctaacttgcctggtggggagtttgctcggtgttgtggtttcgttttgtgtcgaactgcattctgcttgtcgcgatacttacccagttcatccgttgcttaatttggttccttattatgcag

Basic information

species Zea mays
transcript GRMZM2G015642_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71308849|gb|DR790674.1|DR790674
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211352794|gb|FL140688.1|FL140688
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|74245854|gb|DT653768.1|DT653768
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|94478009|gb|EB706967.1|EB706967
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211350390|gb|FL140681.1|FL140681
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|71428602|gb|DR809652.1|DR809652
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|89252836|gb|DY624622.1|DY624622
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211350383|gb|FL140674.1|FL140674
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211350386|gb|FL140677.1|FL140677
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|78108643|gb|DV527061.1|DV527061
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|71764914|gb|DR962851.1|DR962851
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|76015966|gb|DT943136.1|DT943136
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|71312732|gb|DR792898.1|DR792898
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211350395|gb|FL140686.1|FL140686
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|32914010|gb|CF018822.1|CF018822
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211352796|gb|FL140690.1|FL140690
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|50331665|gb|CO526791.1|CO526791
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|91054431|gb|EB164849.1|EB164849
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|31354626|gb|CD438983.1|CD438983
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|71757403|gb|DR955340.1|DR955340
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211350387|gb|FL140678.1|FL140678
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|71313717|gb|DR793448.1|DR793448
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|74245303|gb|DT653217.1|DT653217
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|78076004|gb|DV504438.1|DV504438
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211352793|gb|FL140687.1|FL140687
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211350385|gb|FL140676.1|FL140676
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CKATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211350392|gb|FL140683.1|FL140683
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|149082785|gb|EE172007.2|EE172007
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|78111329|gb|DV529726.1|DV529726
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|31355278|gb|CD439635.1|CD439635
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|31361274|gb|CD445631.1|CD445631
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|101399753|gb|EB821723.1|EB821723
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|76287924|gb|DV027492.1|DV027492
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211350388|gb|FL140679.1|FL140679
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|32913988|gb|CF018800.1|CF018800
EST:     TCCTCAGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|37420495|gb|CF647938.1|CF647938
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211350384|gb|FL140675.1|FL140675
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211350382|gb|FL140673.1|FL140673
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211352795|gb|FL140689.1|FL140689
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTKCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|71437117|gb|DR818167.1|DR818167
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211350391|gb|FL140682.1|FL140682
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
EST: gi|211350394|gb|FL140685.1|FL140685
EST:     TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAG                         CGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC
genomic: TCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 208

TACTCCTGTCAGGCCGCGACGTAGCCCTCCTCCTCTTGCTCTCCCCGCCATCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCACGAATTTTCTGTGTTCTTTGGAAAGCCGCCATGGACGAGTGGATTCGCCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 148

TACTCCTGTCAGGCCGCGACGTAGCCCTCCTCCTCTTGCTCTCCCCGCCATCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCACGAATTTTCTGTGTTCTTTGGAAAGCCGCCATGGACGAGTGGATTCGCCA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 146

TACTCCTGTCAGGCCGCGACGTAGCCCTCCTCCTCTTGCTCTCCCCGCCATCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCACGAATTTTCTGTGTTCTTTGGAAAGCCGCCATGGACGAGTGGATTCGCCA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 191

TACTCCTGTCAGGCCGCGACGTAGCCCTCCTCCTCTTGCTCTCCCCGCCATCCTCTGCTTCTCGTCCACCTGGGATTAGATCTATTTCTTGGTACCTGAGgtaagagacc ... tattatgcagCGATCGAGTGAAATCGATCTAGCCAAGGTGCGGCGGGCGCGGCTTATTCACGAATTTTCTGTGTTCTTTGGAAAGCCGCCATGGACGAGTGGATTCGCCA