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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGCCTGCCGGGCGAAGAAGGGCGAGGACTTCGCGCTGCTCAAGCCCGCCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCCgtaagcgctgcccacctccctggacccggacccgtcttaccttacgcgtcccaatgctagtctgctactatgctccgggttcgtgctgacagggcgcctcgccggtgcttggtctcgttcgctcttgcag

Basic information

species Zea mays
transcript GRMZM2G015610_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015610_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g37660.2 (Oryza sativa), 5'ss of exon 1
---GCAGGCCTGCCGGGCGAAGAAGGGCGAGGACTTCGCGCTGCTCAAGCCCGCCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCCgtaagcgctgcccacctccctggacccggacccgtcttaccttacgcgtcccaatgctagtctgctactatgctccgggttcgtgctgacagggcgcctcgccggt-gcttggtctcgttcgctcttgcag-------------------------------
   |||||| ||  |||| |||||||| ||||||||||||||||||||||| ||||||||||| |  ||||||  || |  | || ||||||||||||||||||| || ||| |    |  || |   ||    | |   |  || ||||  |     | |  |||  | |   | || | | | | |||| |  |  |||    || | ||  |  |  |  ||   |  |||                               
GGGGCAGGCGTGTAGGGCTAAGAAGGGGGAGGACTTCGCGCTGCTCAAGCCGGCCTGCGAGCGCC-TCCCGGCCGGCGG--CGCCCCCTTCTCCGCCTTCGCCgtgagtgct-cgtgtcgtcccgtctcctccactgcaatgact-acgccgcgtgcggtttatctcgttccgcgatctgcgct-gcgctgccgcgctgcccgctcgcttgcacgaccgggggcggattctcagatgagtttttcggttttggttttggttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148930783|gb|EC873124.2|EC873124
EST:     CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCC                         CTGTTCGACGGGCATAACGGGAGCGCCGCAGCGGTGTACGCCGAGGAGCAC
genomic: CCTGCGAGCGACGCCCCGGCGCGCCGTCCACCTCCTTCTCCGCCTTCGCCgtaagcgctg ... gctcttgcagCTGTTCGACGGGCATAACGGGAGCGCCGCAGCGGTGTACGCCGAGGAGCAC