Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAAACGCCCCGCGGCGGCGATGGGATGCTTCCATTCCACGGCCAAGCGGCAGCATCCTGGCTACGAGGACCCCGTGGACCTCGCCTCCCAGACCTCCTgtgagttcgccgatcccatctcttgccctacgcgtacgagctactcgcgtgagttcgagttttttttttcttatttagttttcaatgattgccgtggttg...

Basic information

species Zea mays
transcript GRMZM2G015324_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015324_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g41510.1 (Oryza sativa), 5'ss of exon 1
TCGAAACGCCCCGCG-GCGGCGATGGGATGCTTCCATTCCACGGCCAAGCGGCAGCATCCTGGCTACGAGGACCCCGTGGACCTCGCCTCCCAGACCTCCTgtgagttcgccgatcccatctcttgccctacgcgtacgagctactcgcgtgagttcgagttttttttttcttatttagttttcaat--gattgccgtggttg--------------------------------------------
 |    ||    ||| | || |||||| |||||||| || ||||| | ||| | ||  || || |||||||||||||| | |||||||||| ||||| |||||||||| |  | | |  |  ||||||     | |  |   |||||    |   |  | ||  |||  | | ||  |||  |  ||  ||||   |   | |                                            
-CTGGGCGGGGTGCGCGTGGGGATGGGGTGCTTCCAGTCGACGGCGAGGCGTCCGCGCCCGGGGTACGAGGACCCCGTCGGCCTCGCCTCCGAGACCGCCTgtgagtt-gttgttgctgta-cttgcc----acttgaggagtactctacagtactgtatttcatttcatttcatcaagtagttcatctgatttatgcaatcgatgggcgtactggaaattctgagttagttgttttggatgtgtag