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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGCGTCACGCGGCGGGAGGCCGTCGCCGTCCACTGGCTGCACCACTCGCTTTACGACGTGACCGGCTCCGACTCCAACACGCTCCGGCTCATCCAAAGgtcctccattttccttctctgcctttcttccatgtcaaatcttgatgcaatcatgaccacttttcag

Basic information

species Zea mays
transcript GRMZM2G015080_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015080_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g02870.1 (Oryza sativa), 5'ss of exon 1
TGGGCGTCACGCGGCGGGAGGCCGTCGCCGTCCACTGGCTGCACCACTCGCTTTACGACGTGACCGGCTCCGACTCCAACACGCTCCGGCTCATCCAAAGgtcctccattttccttctctgcctttcttccatgtcaaatcttgatgcaatcatgaccacttttcag---------------------------------
||||||||||||| || ||||||||||||||||||||||||| |||||| || ||||| || |||||||||||||||||||||||| |||||||||| |||| || || ||| |||||||       |  ||  ||    |     | ||||||| | ||||| ||                                  
TGGGCGTCACGCGCCGCGAGGCCGTCGCCGTCCACTGGCTGCGCCACTCCCTCTACGATGTCACCGGCTCCGACTCCAACACGCTCTGGCTCATCCAGAGgtactacacttttcttctctcttcccttgtcaactcgggaccccccggaatcatggctactttacaccctatacttctcattgacattgtgacctagtag

upper sequence: GRMZM2G015080_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g03110.1 (Oryza sativa), 5'ss of exon 1
TGGGCGTCACGCGGCGGGAGGCCGTCGCCGTCCACTGGCTGCACCACTCGCTTTACGACGTGACCGGCTCCGACTCCAACACGCTCCGGCTCATCCAAAGgtcctccattttccttctctgcctttcttccatgtcaaatcttgatgcaatcatgaccacttttcag---------------------------------
| ||||||||||| || ||||||||||||||||||||||||| |||||| || ||||| || |||||||||||||||||||||||| |||||||||| |||| || || ||| ||||| |       |  ||  ||    |     | ||||||| ||||||| ||                                  
TAGGCGTCACGCGCCGCGAGGCCGTCGCCGTCCACTGGCTGCGCCACTCCCTCTACGATGTCACCGGCTCCGACTCCAACACGCTCTGGCTCATCCAGAGgtactacacttttcttctttcttcccttgtcaactcgggaccccccggaatcatggccactttacaccctatatttcccattgacattgtgacctactag