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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCGCAGGGACGGTGAGGCGGCCGGCCCCGTCATCAGGATCAGGGTCTCCCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagccaaccctgttcgttagtcgttactgatccctactcccttatgtcgcatattcgctttggcgaagatgtataggaggaattgggttttgga...

Basic information

species Zea mays
transcript GRMZM2G014720_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014720_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g61500.1 (Oryza sativa), 5'ss of exon 1
---CAGCGCAGGGACGGTGAGGCGGCCGGCCCCGTCATCAGGATCAGGGTCTCCCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagccaaccctgttcgttagtcgttactgatccctactcccttatgtcgcatattcgctttggcgaagatgtataggaggaattgggttttgga----
   |||||||||||||| ||  |||   | || | | ||||| ||||||||||||||||||||  ||||||||| |||| ||||||||||||  | |||||||||| | |   |   |||  ||  |  |||| |    || |      |   ||   |      || |||     | | |||     || | |  |||| ||    
GTGCAGCGCAGGGACGGCGACACGG---GTCCGGCCGTCAGGCTCAGGGTCTCCCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCGgtatgatcctcg--cctcctccctcctcgtgaa-actcgccgtgggcgattgcaacgagggtgccttgtgatcggt-tatgtttcgattagtatttttgatgta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211319553|gb|FL297392.1|FL297392
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGTCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211317528|gb|FL297384.1|FL297384
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211319554|gb|FL297393.1|FL297393
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACTTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|149010033|gb|EE041836.2|EE041836
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|76293992|gb|DV033560.1|DV033560
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211317534|gb|FL297379.1|FL297379
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCAWGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|149109381|gb|EE293275.2|EE293275
EST:     GTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAG-TGNAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGG
genomic: GTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTG-AAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGG
EST: gi|71327900|gb|DR800583.1|DR800583
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211317529|gb|FL297385.1|FL297385
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211319562|gb|FL297401.1|FL297401
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211319550|gb|FL297389.1|FL297389
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211459136|gb|FL297406.1|FL297406
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211317527|gb|FL297383.1|FL297383
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211319558|gb|FL297397.1|FL297397
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGT-GAAGAGGATCCTTGTTCAGACTACTGGCTTGGAG
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAG
EST: gi|149109382|gb|EE190170.2|EE190170
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|50331732|gb|CO526858.1|CO526858
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211459135|gb|FL297405.1|FL297405
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211317533|gb|FL297378.1|FL297378
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGC-TGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|94472248|gb|EB701206.1|EB701206
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211317524|gb|FL297380.1|FL297380
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211319552|gb|FL297391.1|FL297391
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211319561|gb|FL297400.1|FL297400
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|93014141|gb|EB639661.1|EB639661
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCC                         GTGAGTTGAAAAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTG
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTG
EST: gi|101386298|gb|EB815169.1|EB815169
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211319560|gb|FL297399.1|FL297399
EST:     CACGGCGCCAACTTCCGCGAGGTCGTCGTNTCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGA
genomic: CACGGCGCCAACTTCCGCGAGGTCGTCGTG-CCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGA
EST: gi|211459132|gb|FL297402.1|FL297402
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211319549|gb|FL297388.1|FL297388
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|71426783|gb|DR807833.1|DR807833
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGATTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|71440484|gb|DR821534.1|DR821534
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|91056183|gb|EB166601.1|EB166601
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211317523|gb|FL297375.1|FL297375
EST:     CCACGGCGCCAACTTCCGCGA-GTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211459133|gb|FL297403.1|FL297403
EST:     CACGGCGCCNACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTGACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGG
genomic: CACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCT-ACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGG
EST: gi|211319551|gb|FL297390.1|FL297390
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211317520|gb|FL297372.1|FL297372
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|149095906|gb|EE181567.2|EE181567
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|71311568|gb|DR792156.1|DR792156
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|71440483|gb|DR821533.1|DR821533
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|211317525|gb|FL297381.1|FL297381
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
EST: gi|78119667|gb|DV538051.1|DV538051
EST:     CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCG                         GTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC
genomic: CCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 90

CAGCGCAGGGACGGTGAGGCGGCCGGCCCCGTCATCAGGATCAGGGTCTCCCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGCAGAGGCTCTTCTTCCGTGGGAAGGAGAAGAGTGACAGAGAGTTCCTGCA


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 81

CAGCGCAGGGACGGTGAGGCGGCCGGCCCCGTCATCAGGATCAGGGTCTCCCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGCAGAGGCTCTTCTTCCGTGGGAAGGAGAAGAGTGACAGAGAGTTCCTGCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 87

CAGCGCAGGGACGGTGAGGCGGCCGGCCCCGTCATCAGGATCAGGGTCTCCCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGCAGAGGCTCTTCTTCCGTGGGAAGGAGAAGAGTGACAGAGAGTTCCTGCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 323

CAGCGCAGGGACGGTGAGGCGGCCGGCCCCGTCATCAGGATCAGGGTCTCCCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagc ... gtatatgaagGTGAGTTGAAGAGGATCCTTGTTCAGACTACTGGCTTGGAGCCTGAGAGGCAGAGGCTCTTCTTCCGTGGGAAGGAGAAGAGTGACAGAGAGTTCCTGCA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGCGCAGGGACGGTGAGGCGGCCGGCCCCGTCATCAGGATCAGGGTCTCCCACGGCGCCAACTTCCGCGAGGTCGTCGTGCCGGCGCAGGCTACCTTCGgtacgctagccaaccctgttcgttagtcgttactgatccctactcccttatgtcgcatattcgctttggcgaagatgtataggaggaattgggttttgga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctactcc