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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGCAACCCGGACCTTATTCACGAGTCCCAGTGCAGTCGGTTCGCCTCCGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtccactctcctcgttaccctgcccccgtctccttcctcacaggctggtctctgactctgaggcgtcctcatgctgcag

Basic information

species Zea mays
transcript GRMZM2G014367_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014367_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g37837.2 (Oryza sativa), 5'ss of exon 1
GGCGGCAACCCGGACCTTATTCACGAGTCCCAGTGCAGTCGGTTCGCCTCCGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtccac--tctcctcg-ttaccctgcc----cccgtctccttcc----tcacaggctggtctctgactctgaggcgtcctcat--gctgcag
|||||| ||||||| || || | |  ||| ||| |||  || | |||||||||||||||||||||||||||||||||||||||| |    |||||| | |||||| |        || |||  | |||| | |     |   | |||| |     | | | |   || |||||    ||   | ||  |  || ||||
GGCGGCGACCCGGAGCTGATCCGCAGGTCGCAGCGCAACCGCTCCGCCTCCGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACGACCAGTGGCGCCAGAgtaagagagagggggcttctcactcacccgggcgggatcgaaccccttgcgaatccgccgtcccttccctgaccactagttatgcttgttcgccgcag

upper sequence: GRMZM2G014367_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g10190.1 (Oryza sativa), 5'ss of exon 1
GGCGGCAACCCGGACCTTATTCACGAGTCCCAGTGCAGTCGGTTCGCCTCCGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtccactctcctcgttaccctgccc--ccgtctccttcctcacaggctggtctctgactctgaggcgtcctcat--gctgcag
|||||| ||||||| || || | | |||| ||| |||  || | |||||||||||||||||||||||||||||||||||||||| |    |||||| | |||||| |      || ||| | |||| |      ||   |||| |  |   || |||| ||||  |  ||   | ||  |  || ||||
GGCGGCGACCCGGAGCTGATCCGCAAGTCGCAGCGCAACCGCTCCGCCTCCGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACGACCAGTGGCGCCAGAgtaagagagggg-cttctcctcacccggattgatcgaacccttgcagatccgc-ggtccctgatccctagctatacttcttcgccgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211131679|gb|FL352210.1|FL352210
EST:     CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAA                         GGCAGTTCGAGCTGGATAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
genomic: CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtcc ... catgctgcagGGCAGTTCGAGCTGGATAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA