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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGACCAGCAGTGGAACGCTAGAGTATCCGATTTTGGGCTTGCAAAGCTATTGTGGTCAGAGAAAAGCTATGTTACAACCCGTGTTATGGGAACATTTGGgttagtagtgagaacccttccatcctcatcgctactcagtctactacaaacggagctagatcgatcttgtcgttactgagctattggtgctgttgcag

Basic information

species Zea mays
transcript GRMZM2G014366_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014366_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g03410.1 (Oryza sativa), 5'ss of exon 4
TTGACCAGCAGTGGAACGCTAGAGTATCCGATTTTGGGCTTGCAAAGCTATTGTGGTCAGAGAAAAGCTATGTTACAACCCGTGTTATGGGAACATTTGGgttagtagtgagaacccttccatcctcatcgctactcagtctactacaaacggagctagatcgatcttgtcgttactgagctattggtgctgttgcag
|||||||||| ||||| |||| ||| || |||||||| ||||| ||||||||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||||||| ||| || ||   ||    |            | ||||  | |   |  |   |  ||||| || | |||||   |||||   ||||||||
TTGACCAGCAATGGAATGCTAAAGTGTCAGATTTTGGTCTTGCGAAGCTATTGTGCTCAGAGAGAAGTTATGTTACTACCCGTGTTATGGGAACCTTTGGgttagtattgacaatccacacacaacc------------tttactgtacataaaagttagtacatcttatcatgactgaa--attggctatgttgcag

upper sequence: GRMZM2G014366_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G39160.1 (Glycine max), 5'ss of exon 4
TTGACCAGCAGTGGAACGCTAGAGTATCCGATTTTGGGCTTGCAAAGCTATTGTGGTCAGAGAAAAGCTATGTTACAACCCGTGTTATGGGAACATTTGGgttagtagtgagaacccttccatcctcatcgcta-ctcagtctactacaaacggagctagatcgatcttgtcgttactgagctattggtgc----tgttgcag------------------------------------------
|||| |  || |||||| | |  || ||||||||||| ||||| ||||| ||||| || ||||| || || || ||||| || || ||||| |||||||||||||||     || |    ||| ||| |  ||  || |    | || ||   |  | || ||     ||     | || |  | |||| |    ||||  |                                           
TTGATCGCCAATGGAACTCCAAGGTTTCCGATTTTGGACTTGCTAAGCTTTTGTGTTCTGAGAATAGTTACGTCACAACTCGAGTGATGGGGACATTTGGgttagtatgattaagctaagcattctcctatctctcttaccaaattataattagttcaagttcctgtatgattgcaatgtgtaagtggtccctaatgtttaaaggtcaaaagatattgattctctccttttttctttttctgtag

upper sequence: GRMZM2G014366_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 4
TTGACCAGCAGTGGAACGCTAGAGTATCCGATTTTGGGCTTGCAAAGCTATTGTGGTCAGAGAAAAGCTATGTTACAACCCGTGTTATGGGAACATTTGGgttagtagtgagaacccttccatcctc--atcgcta-ctcagtctactacaaacggagctagatcgatcttgtcgttactgagctattggtgctgttgcag---------------------------------------------------
 ||| |  || |||||| | |  || || |||||||||||||| ||||| || || || ||||| || ||||| ||||| || || |||||||||||||||||||||     || |    |||  ||  ||| ||  || |    | || ||   |   ||  |   || |||  | | ||   | |    |  ||| ||                                                    
-TGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTATGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGAACATTTGGGttagtatgattaagctaagcattatcctatctctctcttaccaaattataattagttttaagt---tcctgt-atgattgcaatgtgtaagtggttccaaatttttaaaggtaaaatgatattgattctctcctttttctttttctgtagt

upper sequence: GRMZM2G014366_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 4
TTGACCAGCAGTGGAACGCTAGAGTATCCGATTTTGGGCTTGCAAAGCTATTGTGGTCAGAGAAAAGCTATGTTACAACCCGTGTTATGGGAACATTTGGgttagtagtgagaacccttccatcctcatcgctactcagtctactacaaacggagctagatcgatcttgtcgttactgagctattggtgctgttgcag
|||| |  || |||||| |||  || || ||||||||||| |||||||| || || || |||| ||| ||||| || || ||||| ||||||||||| ||||||||        || || | |  |  |    | ||   || | ||| |    |  | || ||     |   |  | |  |     ||   || |||
TTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGgttagt--------ccatttccttttggtaatgaatcgaccttc-acataaaatggcatattgagaagatttctgat-atttcccaatggctttccag