Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTATGGTCCTCATCGGCGTGCTCCGCTACTTTGTCTCCAAGCTCATGCGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaacttctcttcatccctaccccaattccctcccgatcacgatctgttccccggtttgctcggagggttcgctggatctgagcgatctagatcca...

Basic information

species Zea mays
transcript GRMZM2G014313_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014313_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g32220.1 (Oryza sativa), 5'ss of exon 1
TGGTTATGGTCCTCATCGGCGTGCTCCGCTACTTTGTCTCCAAGCTCATGCGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaacttctcttcatccctaccccaattccctcccgatcacgatctgttccccggttt-gctcgg--agggttcgctggatctgagcgatctagatcca---
|||| ||||| ||||||||||||||||||||||| ||| ||||||| |||||||||||| || | || || || ||||||||||||||||| ||||| ||||  |   ||| ||  || | ||    | || |   | |||||    | || || ||| ||| |||||    |    |||  || ||          |   ||   
TGGTGATGGTGCTCATCGGCGTGCTCCGCTACTTCGTCGCCAAGCTGATGCGCTCCCCGTCGGCGTCGCCCTCCCCCGACCCCAAGCTCGTCAAGGAGGGgttcgttgcttttc--caactct----cgatcctgccgcgatctgtttttgctcgccgatttcgctcgatctgacgccgcgagacctagatccggaggcctcaccg

upper sequence: GRMZM2G014313_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv00s0187g00220.t01 (Vitis vinifera), 5'ss of exon 1
---------TGGTTATGGTCCTCATCGGCGTGCTCCGCTACTTTGTCTCCAAGCTCATGCGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaacttctcttcatccctacc--ccaattccctcccgatcacgatctgttccccggtttgctcggagggttcgctggatctgagcgatctagatcca
         |||| ||||| |||||||| ||||||||||| || ||||||||||||||||| |||         ||||     |||||  ||||  ||||||  |||||||  |||||      || | | |     |  | ||  | ||  | |     |||  |  | |||| |  ||   ||   |  || | ||             
CACTGTCGGTGGTGATGGTTCTCATCGGGGTGCTCCGCTATTTCGTCTCCAAGCTCATGCGATCC---------TCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaaccctagctcctgcatgttagcgtaatctattcctgtgatttcatgtgtct-gatttgatttgattttttattt-atttcag-------------

upper sequence: GRMZM2G014313_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv00s0187g00170.t01 (Vitis vinifera), 5'ss of exon 1
---------TGGTTATGGTCCTCATCGGCGTGCTCCGCTACTTTGTCTCCAAGCTCATGCGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaacttctcttcatcc---ctaccccaattccctcccgatcacgatctgttccccggtttgctcggagggttcgctggatctgagcgatctagatcca
         |||| ||||| |||||||| ||||||||||| || ||||||||||||||||| |||         ||||     |||||  ||||  ||||||  |||||||  |||||      || | |    || |  |||    ||| | | |     |||  |  | |||| |       ||   |  || | ||             
CACTGTCGGTGGTGATGGTTCTCATCGGGGTGCTCCGCTATTTCGTCTCCAAGCTCATGCGATCC---------TCTCAAGTGCCCGATTCCAAAATCGTTAGAGAAGGgttagaaaccctagctcctgcatgttagcgtaatctaatcctg-tgatttcatgtgtct-gatttgatttttttttttttta-atttcag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211497847|gb|FL218030.1|FL218030
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211291996|gb|FL370573.1|FL370573
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|148936325|gb|EC880411.2|EC880411
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGAC-AACCGCACATTTCATCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAAC-GCACAGTTCATCC
EST: gi|211067136|gb|FL218067.1|FL218067
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211064386|gb|FL218050.1|FL218050
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211067130|gb|FL218061.1|FL218061
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|93014362|gb|EB639882.1|EB639882
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211092572|gb|FL395896.1|FL395896
EST:     CGCTCCCCGGNGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCCTGAG-ACCNACGCACAGTTCATCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACC-TGAGGACCAACGCACAGTTCATCC
EST: gi|211159436|gb|FL370487.1|FL370487
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|14202406|gb|BG836083.1|BG836083
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211497851|gb|FL218034.1|FL218034
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211069863|gb|FL218071.1|FL218071
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211497852|gb|FL218035.1|FL218035
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211434427|gb|FL412915.1|FL412915
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCANGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211067128|gb|FL218059.1|FL218059
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGATGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211073353|gb|FL368259.1|FL368259
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211064381|gb|FL218045.1|FL218045
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211109231|gb|FL386007.1|FL386007
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211498980|gb|FL377920.1|FL377920
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211291993|gb|FL370570.1|FL370570
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211069861|gb|FL218069.1|FL218069
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211497849|gb|FL218032.1|FL218032
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211497850|gb|FL218033.1|FL218033
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|50337385|gb|CO532511.1|CO532511
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211069870|gb|FL218078.1|FL218078
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211099802|gb|FL386852.1|FL386852
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211067129|gb|FL218060.1|FL218060
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211064377|gb|FL218041.1|FL218041
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211011084|gb|FL375749.1|FL375749
EST:     CGCTCCCCGGAGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGACGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|32936209|gb|CF041021.1|CF041021
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211011987|gb|FL416045.1|FL416045
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211497846|gb|FL218029.1|FL218029
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAARGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211069871|gb|FL218079.1|FL218079
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211064382|gb|FL218046.1|FL218046
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211269406|gb|FL418839.1|FL418839
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|15545720|gb|BI643514.1|BI643514
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211067131|gb|FL218062.1|FL218062
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211064388|gb|FL218052.1|FL218052
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTTAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211506304|gb|FL378314.1|FL378314
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAA
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAA
EST: gi|211482792|gb|FL423815.1|FL423815
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211064376|gb|FL218040.1|FL218040
EST:     CGCTCCCCGGCGACCTCTCCGTCTCTTGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|148966258|gb|EE017220.2|EE017220
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211533497|gb|FL409016.1|FL409016
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211064385|gb|FL218049.1|FL218049
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211064387|gb|FL218051.1|FL218051
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|15590500|gb|BI675116.1|BI675116
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211266592|gb|FL404013.1|FL404013
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211069864|gb|FL218072.1|FL218072
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211064384|gb|FL218048.1|FL218048
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211497854|gb|FL218037.1|FL218037
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211421551|gb|FL418421.1|FL418421
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|32864290|gb|CF003972.1|CF003972
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|14997069|gb|BI319151.1|BI319151
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211407987|gb|FL375638.1|FL375638
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|91875886|gb|EB405843.1|EB405843
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATTCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211426228|gb|FL393460.1|FL393460
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211069866|gb|FL218074.1|FL218074
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211060158|gb|FL397353.1|FL397353
EST:     CGCTCCCCGGCGACTTCTCTGTCTCCCGACCCCGAGCTCGTTAAGGGACG                         GCAAGTGGTCATCA
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCA
EST: gi|211497848|gb|FL218031.1|FL218031
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|8367730|gb|BE050675.1|BE050675
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211064383|gb|FL218047.1|FL218047
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211067125|gb|FL218056.1|FL218056
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211067137|gb|FL218068.1|FL218068
EST:     CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTNAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
EST: gi|211518357|gb|FL388530.1|FL388530
EST:     CGCTCCCCGGTGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGG                         GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC
genomic: CGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaact ... cgatctgcagGCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTTATGGTCCTCATCGGCGTGCTCCGCTACTTTGTCTCCAAGCTCATGCGCTCCCCGGCGACCTCTCCGTCTCCCGACCCCAAGCTCGTTAAGGAAGGgtaggaaacttctcttcatccctaccccaattccctcccgatcacgatctgttccccggtttgctcggagggttcgctggatctgagcgatctagatcca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctacccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc