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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCAGCTGTAGTTCATGATAACCTTCCCTGCTATTGTGGCTACTGCAGGAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgatcgtaatgtactctcaaatttatattaatatatactattattagtaatgaattttttttattttatcaatgttttttcttttgggctggtggct...

Basic information

species Zea mays
transcript GRMZM2G013607_T06
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013607_T06 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g01930.1 (Oryza sativa), 5'ss of exon 6
TTTTCAGCTGTAGTTCATGATAACCTTCCCTGCTATTGTGGCTACTGCAGGAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgatcgtaatgtactctcaaatttatattaatat--atactattattagtaatgaattttttttattttatcaatgttttttcttttgggctggtggct
                                                  |||||||||| || |||||||||||||| || |||||||| ||||| |||||||| ||   ||   |  ||   ||| ||||| | |  || ||||| |    | |||| |     ||  |   || |    |||  |   |          
--------------------------------------------------GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGgtatgctctatataaccattcctttttttattatttttcatgctattgtagagattgaagtgccactaactagccatttcaattttgtccag----------

upper sequence: GRMZM2G013607_T06 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G17370.1 (Glycine max), 5'ss of exon 6
TTTTCAGCTGTAGTTCATGATAACCTTCCCTGCTATTGTGGCTACTGCAGGAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgatcgtaatgtactctcaaatttatattaatatatactattattagtaatgaattttttttatttt--atcaatgtttttt-cttttgggctggtggct------------
                                                  |||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||||||  |||   | ||  ||| |  | | || | | ||      ||  | | ||| |||||| | | ||||  |  |  |||||   |||    |  ||| |              
--------------------------------------------------GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGgtac-atcacga-gtgatctgatctatgtagtgaaatg-----ttgcttgaaattaattttatgttttttgaaataccgttttccacttacaagagggtcgaatcatttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33097204|gb|CF057164.1|CF057164
EST:     GAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATG                         GATGTAAAATATTATAGCAAGTTAGAAGATCCAGCAGATGAAGAAAACGAT
genomic: GAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgatcgt ... tcttatccagGATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGAT
EST: gi|213170721|gb|FM187986.1|FM187986
EST:     GTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATG                         GATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGAT
genomic: GTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgatcgt ... tcttatccagGATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGAT