1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
GCCGGAGTTGTGGGGGCTCCGTTGGCCATGTCGATGGACTCGGACAGCTCGTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACCgtaagtccggttcccattctcagcttgccgcaatccttggttggtgggaaatgatgtggacgagggaagggggacggagattgtgtttgatcctgggaaa...
species | Zea mays |
transcript | GRMZM2G012942_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACC GTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCATEST: gi|211425195|gb|FL233969.1|FL233969
genomic: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACCgtaagtccgg ... aatcatatagGTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCAT
EST: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACC GTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCATEST: gi|101399517|gb|EB821626.1|EB821626
genomic: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACCgtaagtccgg ... aatcatatagGTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCAT
EST: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACC GTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCATEST: gi|211425196|gb|FL233970.1|FL233970
genomic: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACCgtaagtccgg ... aatcatatagGTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCAT
EST: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACC GTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCATEST: gi|211425194|gb|FL233968.1|FL233968
genomic: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACCgtaagtccgg ... aatcatatagGTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCAT
EST: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACC GTTTGTTAGCTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCATEST: gi|211425197|gb|FL233971.1|FL233971
genomic: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACCgtaagtccgg ... aatcatatagGTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCAT
EST: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACC GTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCATEST: gi|18170862|gb|BM340702.1|BM340702
genomic: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACCgtaagtccgg ... aatcatatagGTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCAT
EST: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACC GTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCATEST: gi|18163515|gb|BM333354.1|BM333354
genomic: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACCgtaagtccgg ... aatcatatagGTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCAT
EST: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACC GTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCAT
genomic: GTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACCgtaagtccgg ... aatcatatagGTTTGTTAGTTGAAATGCTGAGATCGACTCGAAAGAGCTCAAAATCATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGGAGTTGTGGGGGCTCCGTTGGCCATGTCGATGGACTCGGACAGCTCGTCGCACAGCGGCGCCGACTACAGGAGTTTCCGCCAGATCACCCGAGACCgtaagtccggttcccattctcagcttgccgcaatccttggttggtgggaaatgatgtggacgagggaagggggacggagattgtgtttgatcctgggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA