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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTCTATTTGGCCTGCTGGGATCCATGCTTTCTGAACTACTCATGAACTGGACTATATACTCCAACAAGgccagtataagtaataaatgaataacattttattttttccagttgattgataatcgcttagctcatctacttaatttgctcttgcag

Basic information

species Zea mays
transcript GRMZM2G012167_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G012167_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g35730.1 (Oryza sativa), 5'ss of exon 3
----------------------------GGAGCTCTATTTGGCCTGCTGGGATCCATGCTTTCTGAACTACTCATGAACTGGACTATATACTCCAACAAGgccagtataagtaataaatgaata-acattttattttttccagttgattgataatcgcttagctcatctacttaatttgctcttgcag
                            |||||| ||||||| ||||| ||||| ||||||||||| ||  | |||||||||||||| || ||||||||||  |||| | |  ||| ||| | | |||||||   | ||| ||||| |||||  | | || | |||   |  ||||   |||||||||
TAATAACTACATCTCTGTTGGAGCCTCTGGAGCTTTATTTGGACTGCTTGGATCAATGCTTTCTGAGCTTATTATGAACTGGACTATTTATTCCAACAAGgttagtaaatgagatagatgcacatacattttcactattc-agttgcttgatgtttgttttgatca---agctaatccactcttgcag