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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTTGGCGGGCGGCATCAAGGACGTGCCGGGGAACGAGAACGACCTTCACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctcaaccccctttgcctgtttgctaccccttctctgtgacgtgcccgtgttctgctggcattgagatcgtctgcagttacctcccctgcagtt...

Basic information

species Zea mays
transcript GRMZM2G012160_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G012160_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g58890.3 (Oryza sativa), 5'ss of exon 1
GACGTTGGCGGGCGGCATCAAGGACGTGCCGGGGAACGAGAACGACCTTCACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctcaaccccctttgcctgtttgctaccccttctctgtgacgtgcccgt-gttctgctggcattgagatcgtctg--cagttacctcccctgcagtt
   |  || |   |||  |   ||   |  |||||||||||||||||| ||||||   || ||||||||||||||||||   |||||||||||||||||||||||| | |  | |      |||  |  ||||  || ||||  |    ||| || || |  || |   || | ||    |   | |||     |        
AGGGCCGGTGCTTGGCGGCGTCGAGCCGGTGGGGAACGAGAACGACCTCCACCTCGTCGACCTCGCCCGCTTCGCCGTCACCGAGCACAACAAGAAGGCCgtaagcgccccgctctac---cctcctccctacttctcctcttcgcaaggccggtcgtccaactagatctgtgttctatggactaattatgcaacgcatgaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51592298|gb|CV071444.1|CV071444
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|71447100|gb|DR828150.1|DR828150
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211426509|gb|FL062852.1|FL062852
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|116819319|gb|EC862429.1|EC862429
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211426515|gb|FL062858.1|FL062858
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211051541|gb|FL062632.1|FL062632
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|20802982|gb|BQ294032.1|BQ294032
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|78110749|gb|DV529147.1|DV529147
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211426513|gb|FL062856.1|FL062856
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|78110748|gb|DV529146.1|DV529146
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211245419|gb|FL062770.1|FL062770
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211238705|gb|FL062724.1|FL062724
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211048577|gb|FL062611.1|FL062611
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCS                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211421287|gb|FL062818.1|FL062818
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|76923573|gb|DV169554.1|DV169554
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|18167602|gb|BM337442.1|BM337442
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAAAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|37419198|gb|CF647276.1|CF647276
EST:     ACCCCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|91876051|gb|EB406008.1|EB406008
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211243175|gb|FL062747.1|FL062747
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|18165921|gb|BM335760.1|BM335760
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTATGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|18177993|gb|BM379203.1|BM379203
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211060445|gb|FL062681.1|FL062681
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211426506|gb|FL062849.1|FL062849
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211054498|gb|FL062652.1|FL062652
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211252102|gb|FL062801.1|FL062801
EST:     ACCTCCAGGAGCTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGT
EST: gi|116828894|gb|EC862020.1|EC862020
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211247651|gb|FL062785.1|FL062785
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|13381874|gb|BG458549.1|BG458549
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGNNNNNNNGTGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211051542|gb|FL062633.1|FL062633
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211060441|gb|FL062677.1|FL062677
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211429102|gb|FL062871.1|FL062871
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211060436|gb|FL062672.1|FL062672
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211423896|gb|FL062841.1|FL062841
EST:     ACCTCCAGGAGCTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211429100|gb|FL062869.1|FL062869
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211240945|gb|FL062738.1|FL062738
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211426514|gb|FL062857.1|FL062857
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|47962403|gb|CN845112.1|CN845112
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211238699|gb|FL062718.1|FL062718
EST:     ACCTCCAGGAGCTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211429104|gb|FL062873.1|FL062873
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211048581|gb|FL062615.1|FL062615
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211247638|gb|FL062772.1|FL062772
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|116814432|gb|EC856985.1|EC856985
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAG
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAG
EST: gi|211245412|gb|FL062763.1|FL062763
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|16922783|gb|BM075775.1|BM075775
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTTTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211243171|gb|FL062743.1|FL062743
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211240934|gb|FL062727.1|FL062727
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211252106|gb|FL062805.1|FL062805
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCYCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211057460|gb|FL062656.1|FL062656
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211247647|gb|FL062781.1|FL062781
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|13237222|gb|BG355236.1|BG355236
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         C
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcag-
EST: gi|13237222|gb|BG355236.1|BG355236
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         C
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcag-
EST: gi|211054485|gb|FL062639.1|FL062639
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAAGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211252104|gb|FL062803.1|FL062803
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|71445980|gb|DR827030.1|DR827030
EST:     CAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: CAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|92088076|gb|EB484307.1|EB484307
EST:     ACCTCCAGGAGCTCGCCCGATTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCCCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|13198526|gb|BG354365.1|BG354365
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211057464|gb|FL062660.1|FL062660
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|211054493|gb|FL062647.1|FL062647
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
EST: gi|116814597|gb|EC857182.1|EC857182
EST:     ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCC                         AATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT
genomic: ACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 175

GACGTTGGCGGGCGGCATCAAGGACGTGCCGGGGAACGAGAACGACCTTCACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTTGCTGGCACGATGTACTATCTCACTATTGAAGTGAAGGATGGCGAAGTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 3625

GACGTTGGCGGGCGGCATCAAGGACGTGCCGGGGAACGAGAACGACCTTCACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTTGCTGGCACGATGTACTATCTCACTATTGAAGTGAAGGATGGCGAAGTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1565

GACGTTGGCGGGCGGCATCAAGGACGTGCCGGGGAACGAGAACGACCTTCACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTTGCTGGCACGATGTACTATCTCACTATTGAAGTGAAGGATGGCGAAGTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 549

GACGTTGGCGGGCGGCATCAAGGACGTGCCGGGGAACGAGAACGACCTTCACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctc ... cgctgtgcagAATGCTCTTCTGGGGTTCGAGAAGCTTGTGAAGGCCAAGACACAAGTGGTTGCTGGCACGATGTACTATCTCACTATTGAAGTGAAGGATGGCGAAGTGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACGTTGGCGGGCGGCATCAAGGACGTGCCGGGGAACGAGAACGACCTTCACCTCCAGGAACTCGCCCGCTTCGCCGTCGATGAGCACAACAAGAAGGCCgtaagccctcaaccccctttgcctgtttgctaccccttctctgtgacgtgcccgtgttctgctggcattgagatcgtctgcagttacctcccctgcagtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcccc