Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCGAACTACTCCTCGTCGCCAAAACCCTAGCCCTGCTTCTTTGCCATGGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatccgaacggtcttctgctctcccctcctttttcgcctcgatttgccgcgatcggctcctgatatctcgaacgttctttgttgcttgtcacag

Basic information

species Zea mays
transcript GRMZM2G012052_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G012052_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g38550.2 (Oryza sativa), 5'ss of exon 1
GCGGCGAACTACTCCTCGTCGCCAAAACCCTAGCCCTGCTTC------------TTTGCCATGGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatccgaacggtct-------------------tctgctctccc---ctcctttttcgcctcgatttgccg-cgatcggctcctgatatct-cgaacgttctttgttgcttgtcacag
             ||   |||||||||||||| | | | | |             || |||||||||    ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||| |                    |||  |||||     |  ||||| | | ||||| | || ||||||| || |||| |   |   | || ||    | | ||  |||
------------CCCCAATCGCCAAAACCCTAACTCCGATCCGATCGAGCTCTGCTTCCCATGGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcggaacggccccccgtgcaatcttatctcgtctaatctcctatttttttttttggtcccgattcgtcggcgatcggttcttgatcttggcccgcctttttgcgggatcgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8368602|gb|BE051547.1|BE051547
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACGGGGTGGTTGGTTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211199715|gb|FL182828.1|FL182828
EST:     GGCGAGCRGCGCTAGCCAGGCGAGCCTCCTGCTCCAKAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGAC
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGAC
EST: gi|211202276|gb|FL182841.1|FL182841
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|60397439|gb|DN230255.1|DN230255
EST:     AGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: AGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211199703|gb|FL182816.1|FL182816
EST:     GGCGAGCAGCGCTASCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGGATGGGTTCTCCGCCGGGCTTGTAGACGAC
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGT-GGATGGGTTCTCCGCCGGGCTTGTAGACGAC
EST: gi|8367792|gb|BE050737.1|BE050737
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32866578|gb|CF006260.1|CF006260
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211202269|gb|FL182834.1|FL182834
EST:     GGCGAGCAGCGCTA-SCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|78106425|gb|DV524843.1|DV524843
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211204840|gb|FL182847.1|FL182847
EST:     GGCGAGCAGCGCTA-SCAGGCGAGSCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32859566|gb|CD999247.1|CD999247
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGNNCTTGTAGACGA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGG--CTTGTAGACGA
EST: gi|32912414|gb|CF017226.1|CF017226
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32937161|gb|CF041980.1|CF041980
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32915741|gb|CF020553.1|CF020553
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211199713|gb|FL182826.1|FL182826
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32915780|gb|CF020592.1|CF020592
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211202277|gb|FL182842.1|FL182842
EST:     GGCGAGCAGCGCTASSCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32937054|gb|CF041873.1|CF041873
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211202270|gb|FL182835.1|FL182835
EST:     GGCGAGCAGCGCTASSCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211202278|gb|FL182843.1|FL182843
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|87157616|gb|DY402405.1|DY402405
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211199712|gb|FL182825.1|FL182825
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211204842|gb|FL182849.1|FL182849
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|113702787|gb|EE680291.1|EE680291
EST:     GGGGAGCAGCGCTAGCCAGGCGAGCCTCCTGTTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211063555|gb|FL182811.1|FL182811
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|116813435|gb|EC855886.1|EC855886
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|67043112|gb|CO469367.1|CO469367
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACCACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|8368603|gb|BE051548.1|BE051548
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211202267|gb|FL182832.1|FL182832
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211202275|gb|FL182840.1|FL182840
EST:     GGCGAGCAGCGCTA-SCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211202273|gb|FL182838.1|FL182838
EST:     GGCGAGCAGCGCTASCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32865547|gb|CF005229.1|CF005229
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211199707|gb|FL182820.1|FL182820
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTWGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211199714|gb|FL182827.1|FL182827
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|8367211|gb|BE050156.1|BE050156
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|37397234|gb|CF635912.1|CF635912
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211199704|gb|FL182817.1|FL182817
EST:     GCGAGNCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GCGAG-CAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211202268|gb|FL182833.1|FL182833
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|21843234|gb|BQ703815.1|BQ703815
EST:     CCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: CCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32910355|gb|CF015167.1|CF015167
EST:     GAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|78081300|gb|DV509712.1|DV509712
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211063556|gb|FL182812.1|FL182812
EST:     GGCGAGCAGCGCTASSCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|22818858|gb|BU498948.1|BU498948
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCG-GGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211202279|gb|FL182844.1|FL182844
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|60345359|gb|DN212332.1|DN212332
EST:     CAGCGCTAGCCAAGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: CAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32864378|gb|CF004060.1|CF004060
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCG
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCG
EST: gi|28568878|gb|CB280753.1|CB280753
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTCGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211063552|gb|FL182808.1|FL182808
EST:     GGCGAGCAGCGCTASCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211202280|gb|FL182845.1|FL182845
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211063553|gb|FL182809.1|FL182809
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211199711|gb|FL182824.1|FL182824
EST:     GGCGAGCAGCGCTA-SCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32855663|gb|CD995344.1|CD995344
EST:     GGCGAGCATCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211199717|gb|FL182830.1|FL182830
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211204839|gb|FL182846.1|FL182846
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211063548|gb|FL182804.1|FL182804
EST:     GGCGAGCAGCGCTA-SCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|26557802|gb|CA830037.1|CA830037
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32936878|gb|CF041697.1|CF041697
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|60396215|gb|DN229084.1|DN229084
EST:     AGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: AGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211063558|gb|FL182814.1|FL182814
EST:     GGCGAGCAGCGCTASSCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|71764281|gb|DR962218.1|DR962218
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211063550|gb|FL182806.1|FL182806
EST:     GGCGAGCAGCGCTA-CCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211199706|gb|FL182819.1|FL182819
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211063559|gb|FL182815.1|FL182815
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|31360886|gb|CD445243.1|CD445243
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211199705|gb|FL182818.1|FL182818
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211063549|gb|FL182805.1|FL182805
EST:     GGCGAGCAGCGCTA-SCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|60340966|gb|DN207939.1|DN207939
EST:     AAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: AAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|76289728|gb|DV029296.1|DV029296
EST:     GCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32868626|gb|CF008308.1|CF008308
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32936126|gb|CF040938.1|CF040938
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32936903|gb|CF041722.1|CF041722
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211202274|gb|FL182839.1|FL182839
EST:     CGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: CGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211204841|gb|FL182848.1|FL182848
EST:     GGCGAGCAGCGCTA-CYAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211063547|gb|FL182803.1|FL182803
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGA                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|60399525|gb|DN232336.1|DN232336
EST:     CCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: CCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|32915813|gb|CF020625.1|CF020625
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211063557|gb|FL182813.1|FL182813
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCAGCCGGGCTTGTAGACGAC
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCC-GCCGGGCTTGTAGACGAC
EST: gi|32858203|gb|CD997884.1|CD997884
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211199708|gb|FL182821.1|FL182821
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211202271|gb|FL182836.1|FL182836
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|211199716|gb|FL182829.1|FL182829
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCYGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
EST: gi|15589463|gb|BI674079.1|BI674079
EST:     GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGG                         ATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA
genomic: GGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 284

GCGGCGAACTACTCCTCGTCGCCAAAACCCTAGCCCTGCTTCTTTGCCATGGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACAGCAACATCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 225

GCGGCGAACTACTCCTCGTCGCCAAAACCCTAGCCCTGCTTCTTTGCCATGGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACAGCAACATCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 165

GCGGCGAACTACTCCTCGTCGCCAAAACCCTAGCCCTGCTTCTTTGCCATGGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACAGCAACATCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 482

GCGGCGAACTACTCCTCGTCGCCAAAACCCTAGCCCTGCTTCTTTGCCATGGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatcc ... cttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACAGCAACATCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGGCGAACTACTCCTCGTCGCCAAAACCCTAGCCCTGCTTCTTTGCCATGGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatccgaacggtcttctgctctcccctcctttttcgcctcgatttgccgcgatcggctcctgatatctcgaacgttctttgttgcttgtcacag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA