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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCCTCTCCCTCTCGTGGCCACGACTGCCGCCGCTGCCGCCCTACGCCAGGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccaccgcatgctcttaaccttggtcttcaccctcagcttcatttccagctgcgcgaaaccgagcacctaaaccctaacttaccatcggtattcg...

Basic information

species Zea mays
transcript GRMZM2G011923_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149078427|gb|EE167203.2|EE167203
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|149080351|gb|EE169368.2|EE169368
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|76018226|gb|DT945396.1|DT945396
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|148936288|gb|EC880369.2|EC880369
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|149082226|gb|EE171409.2|EE171409
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|149107939|gb|EE292295.2|EE292295
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|31351868|gb|CD436225.1|CD436225
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGATATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|22520810|gb|BU079621.1|BU079621
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGATATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|149109888|gb|EE293692.2|EE293692
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|149102032|gb|EE287514.2|EE287514
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|149107040|gb|EE188934.2|EE188934
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|149111905|gb|EE191062.2|EE191062
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|149079616|gb|EE168608.2|EE168608
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|50330529|gb|CO525655.1|CO525655
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|21809820|gb|BQ668138.1|BQ668138
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGATATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|93282541|gb|EB674805.1|EB674805
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|211413348|gb|FL280970.1|FL280970
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGATATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGNG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|8367226|gb|BE050171.1|BE050171
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGATATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|21987395|gb|BQ778923.1|BQ778923
EST:     TCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGATATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: TCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|211413356|gb|FL280978.1|FL280978
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGATATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGNG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|148982113|gb|EE028162.2|EE028162
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|22546459|gb|BU098770.1|BU098770
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGATATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|149104211|gb|EE289644.2|EE289644
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|149107300|gb|EE189181.2|EE189181
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|211413349|gb|FL280971.1|FL280971
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
EST: gi|78087741|gb|DV516134.1|DV516134
EST:     GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAG                         ATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG
genomic: GGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccac ... ggggtaccagATCGACCGAGCTATGGACGGCCTGTGGCATCTGGGGGACGAGCTCCGCGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCCCTCTCCCTCTCGTGGCCACGACTGCCGCCGCTGCCGCCCTACGCCAGGTGTCCAGGTCATCTCCGGCCCATTCGCCGGCGACGAGCACCCCACTAGgtacgcccaccgcatgctcttaaccttggtcttcaccctcagcttcatttccagctgcgcgaaaccgagcacctaaaccctaacttaccatcggtattcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctcagc