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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGGTTCACCCCGCTGAAGCCGAAGCCGCTGGGATCCATCCTCGACATCGAACGCGCCAAGGGCCTCTCCCCCGACCACCTCGTCGCCGCATGGGATGACgtcagtccccgccccctcattagtcatttcattcggtttttttgtggtttgtgtgttataagaattgaggagatcccctctgacggccgtcgtaggtaag...

Basic information

species Zea mays
transcript GRMZM2G011777_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011777_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g20860.2 (Oryza sativa), 5'ss of exon 1
CGGGTTCACCCCGCTGAAGCCGAAGCCGCTGGGATCCATCCTCGACATCGAACGCGCCAAGGGCCTCTCCCCCGACCACCTCGTCGCCGCATGGGATGACgtcagtccccgccccctcattagtcatttcattcggtttttttgtggtttgtgtgttataagaattgaggagatcccctctgacggccgtcgtaggtaag----------
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CGGGTTCACCCCACTGCAGCCCAAGCCGCTCGCCTCCATCCTCGACGTCGAGCGCGCCAGCGGACTCTCCCCCGACCACCTCGTCGCCGCCTGGGATGACgtcagt----gcctcctcatt--tcctttcgttttgctctgttccgttttcgatgtgcca----ttgacgggatcccctccaatgtctgcactagaagatcgtcctggtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211073815|gb|FL047510.1|FL047510
EST:     AACGCGCCAAGGGCCTCTCCCCCGACCACCTCGTCGCCGCATGGGATGAC                         TATCATTTAGGAAGGGGTCATATAGGTGCATCTATGAAAGCAAAACTTTAC
genomic: AACGCGCCAAGGGCCTCTCCCCCGACCACCTCGTCGCCGCATGGGATGACgtcagtcccc ... tgaatattagTATCATTTAGGAAGGGGTCATATAGGTGCATCTATGAAAGCAAAACTTTAC