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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCACGGTGCTCCAGCGCCTGGACCCAGCCGTCGAGGACATCCTCATCACCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccaccgatcccccccacgcgcgctccatttactagaccctgatcccatccggcatgatctcacggcggattatctggttgttggcttgttccgcgcag

Basic information

species Zea mays
transcript GRMZM2G011173_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011173_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g05650.1 (Oryza sativa), 5'ss of exon 1
CCTCACGGTGCTCCAGCGCCTGGACCCAGCCGTCGAGGACATCCTCATCACCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagc----caccgatcccccccacgcgcgctccatttactagac--cctgatcccatccggcatgatctcacg-gcggattatctggttgttggcttgttccgcgcag
|||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||    | ||  ||| | || ||||    | ||    | |    | || |           ||| |||||    |   | | |  || ||  ||| ||     |||
CCTCACCGTGCTGCAGCGCCTCGACCCCGCCGTCGAGGACATCCTCATCACCGCCGCCCACGTCACCCTCTACGACTTCAACATCGACCTCAACCAGTGGgtgagcgatccccccctccactcctcgcggatccgatccggttggttgcttgcttggtgatcctgtgagctcactcatgcgctgtgttttttttc-cttttttgtttcag

upper sequence: GRMZM2G011173_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G39120.1 (Glycine max), 5'ss of exon 1
CCTCACGGTGCTCCAGCGCCTGGACCCAGCCGTCGAGGACATCCTCATCACCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccaccgatcccccccacgcgcgctccatttactagaccctgatcccatccggcatgatctcacggcggattatctggttgttggcttgttccgcgcag
 ||||| || ||||| ||  | |||||   ||| || || || ||||||||||||||||| |||||  | ||||| ||||||||||| ||||  || |||||   |   |  ||       |   |  ||  |||     |   | ||||||| |       |||| |  ||   | |   |   |||  |||          
TCTCACTGTTCTCCAACGAATCGACCCCTTCGTTGAAGAAATTCTCATCACCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgttcactctctttctatttttcttac-ttctgttttt---attttcatcccattc-------tctctcatcgctctcttccgcgattgctttgcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91050350|gb|EB160768.1|EB160768
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|19436293|gb|BM952703.1|BM952703
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|89248124|gb|DY619910.1|DY619910
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|71419808|gb|DR804903.1|DR804903
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|71435432|gb|DR816482.1|DR816482
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|71320866|gb|DR797150.1|DR797150
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|76013659|gb|DT940829.1|DT940829
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|71313019|gb|DR793034.1|DR793034
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|211502577|gb|FL311927.1|FL311927
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|211145073|gb|FL314893.1|FL314893
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|211515074|gb|FL458384.1|FL458384
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAGG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAGG
EST: gi|67034610|gb|CO463160.1|CO463160
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|78091120|gb|DV519494.1|DV519494
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|74241849|gb|DT649763.1|DT649763
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|93016793|gb|EB642313.1|EB642313
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|71768256|gb|DR966193.1|DR966193
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|94477701|gb|EB706659.1|EB706659
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|101382184|gb|EB813148.1|EB813148
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
EST: gi|87153649|gb|DY398438.1|DY398438
EST:     CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGG                         AGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG
genomic: CCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccacc ... ttccgcgcagAGCCGGAAGGACGTCGAGGGGTCGCTGTTCGTCGTCAAGAG