1 5' 3' | 2 5' 3' | 3 5' 3' |
CGAGGAGGCCAAGGTCTACGTCGGAAACCTGCCCTACGACGTCGACAGCGAGCGCCTCGCTCAGCTCTTCGACCAGGCCGGCGTCGTCGAGGTCGCAGAGgtgacgtcccttcaacaattgtttgtggctactgcctcccccttgtcctactccttgccccggaacaaatttgcctcaacttagaccgcaccgcagccac...
species | Zea mays |
transcript | GRMZM2G011129_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCGCCTCGCTCAGCTCTTCGACCAGGCCGGCGTCGTCGAGGTCGCAGAG GTCATTTACAACAGAGAAACAGATCAAAGTCGTGGGTTTGGGTTTGTCACTEST: gi|40335533|gb|CK369603.1|CK369603
genomic: AGCGCCTCGCTCAGCTCTTCGACCAGGCCGGCGTCGTCGAGGTCGCAGAGgtgacgtccc ... cactgcgcagGTCATTTACAACAGAGAAACAGATCAAAGTCGTGGGTTTGGGTTTGTCACT
EST: AGCGCCTCGCTCAGCTCTTCGACCAGGCCGGCGTCGTCGAGGTCGCAGAG GTCATTTACAACAGAGAAACAGATCAAAGTCGTGGGTTTGGGTTTGTCACTEST: gi|71756576|gb|DR954513.1|DR954513
genomic: AGCGCCTCGCTCAGCTCTTCGACCAGGCCGGCGTCGTCGAGGTCGCAGAGgtgacgtccc ... cactgcgcagGTCATTTACAACAGAGAAACAGATCAAAGTCGTGGGTTTGGGTTTGTCACT
EST: AGCGCCTCGCTCAGCTTTTCGACCAGCCCGGCGTCGTCGAGGTCGCAGAG GTCATTTACAACAGAGAAACAGATCAAAGTCGTGGGTTTGGGTTTGTCACTEST: gi|44900775|gb|CK827320.1|CK827320
genomic: AGCGCCTCGCTCAGCTCTTCGACCAGGCCGGCGTCGTCGAGGTCGCAGAGgtgacgtccc ... cactgcgcagGTCATTTACAACAGAGAAACAGATCAAAGTCGTGGGTTTGGGTTTGTCACT
EST: AGCGCCTCGCTCAGCTCTTCGACCAGGCCGGCGTCGTCGAGGTCGCAGAG GTCATTTACAACAGAGAAACAGATCAAAGTCGTGGGTTTGGGTTTGTCACT
genomic: AGCGCCTCGCTCAGCTCTTCGACCAGGCCGGCGTCGTCGAGGTCGCAGAGgtgacgtccc ... cactgcgcagGTCATTTACAACAGAGAAACAGATCAAAGTCGTGGGTTTGGGTTTGTCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGAGGCCAAGGTCTACGTCGGAAACCTGCCCTACGACGTCGACAGCGAGCGCCTCGCTCAGCTCTTCGACCAGGCCGGCGTCGTCGAGGTCGCAGAGgtgacgtcccttcaacaattgtttgtggctactgcctcccccttgtcctactccttgccccggaacaaatttgcctcaacttagaccgcaccgcagccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctactcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcacc