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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGACGCCCGCAAGCCCAGCAACCTCAAGgtgcgctgcccgctccccggatgcgtcgcgctcgctgctccatctcacgccggctgactccttgccgttgctttctccgcag

Basic information

species Zea mays
transcript GRMZM2G010202_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g70380.1 (Oryza sativa), 5'ss of exon 1
GCTCACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGACGCCCGCAAGCCCAGCAACCTCAAGgtgcgctg---cccgctccccggatgcgtcgcgctcgctgctccatctcacgccggctgactc---cttgccgttgct-ttctccgcag------------
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||||| ||||||||    ||   | | ||| |  | |   ||    |   |      | |      || |  |||   ||  |    ||| | ||||   |            
GCTGACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGACGCTGGCAAATCCAGCAATCTCAAGgttttttgattctctctctctcgttttctctttttttttctgatttttttttttggttatctctcgctcactcacgctgtcctccttggtgaattcgttag

upper sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 1
GCTCACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGACGCCCGCAAGCCCAGCAACCTCAAGgtgcgctgcccgctccccggatgcgtcgcgctcgctgctccatctcacgccggctgactccttgccgttgcttt--ctccgcag
  | |||||   ||||||||||||| | |||||||||||||||||| || | || ||||||||||  ||| |||||    |||   ||| ||| ||  |||| | |  |  | |       | | |   ||    |     ||   |       | |   |    ||||| |||   ||  |||
CTTAACCACCTACTTCAGCTACGGCTTGCTCTTCGCCTTCGGCCAGTTCAGGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCAGgttc-caacaagattt-----tacattttgcatattatgatattatatttataataataacaacgcgttgatttgtttcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19821837|gb|BQ047861.1|BQ047861
EST:     TTCCGCAGGATCCTCGACGCCCGCAAGCCCAGCAACCTCAAG                         GGCTACGCGCCGATCTGCTTGGGACTCGAGGATTTCTACACGCGACGCCTC
genomic: TTCCGCAGGATCCTCGACGCCCGCAAGCCCAGCAACCTCAAGgtgcgctgcc ... ttctccgcagGGCTACGCGCCGATCTGCTTGGGACTCGAGGATTTCTACACGCGACGCCTC
EST: gi|87151662|gb|DY396451.1|DY396451
EST:     GCGACTTCTTCCGCAGGATCCTCGACGCCCGCAAGCCCAGCAACCTCAAG                         GGCTACGCGCCGATCTGCTTGGGACTCGAGGATTTCTACACGCGACGCCTC
genomic: GCGACTTCTTCCGCAGGATCCTCGACGCCCGCAAGCCCAGCAACCTCAAGgtgcgctgcc ... ttctccgcagGGCTACGCGCCGATCTGCTTGGGACTCGAGGATTTCTACACGCGACGCCTC
EST: gi|87152364|gb|DY397153.1|DY397153
EST:     GCGACTTCTCCCGCAGGATCCTCGACGCCCGCAAGCCCAGCAACCTCAAG                         GGCTACGCGCCGATCTGCTTGGGACTCGAGGATTTCTACACGCGACGCCTC
genomic: GCGACTTCTTCCGCAGGATCCTCGACGCCCGCAAGCCCAGCAACCTCAAGgtgcgctgcc ... ttctccgcagGGCTACGCGCCGATCTGCTTGGGACTCGAGGATTTCTACACGCGACGCCTC