1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACCGCCCCCTCCGCACGCTCGACCCCACCCAGGATCACAAGCTCATGTTCGGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtcctacttctcgatcttctagcactcgtgtgagcggttatttactgaggcggtcgctagtcggaaataatttcgcatcgatcctacatcagggta...
species | Zea mays |
transcript | GRMZM2G010146_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|94477699|gb|EB706657.1|EB706657
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC ---A-AAA-GGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|148932965|gb|EE285816.2|EE285816
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|93284352|gb|EB676616.1|EB676616
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|71425314|gb|DR806606.1|DR806606
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|71436637|gb|DR817687.1|DR817687
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|71434336|gb|DR815386.1|DR815386
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|71316463|gb|DR794909.1|DR794909
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGCTCCTCTTCTCCCTTCGCTCCTTCACCCGCCA-GATCGACCCAACCAC GGCAGAAAAGGGAAEST: gi|76930392|gb|DV172364.1|DV172364
genomic: GGCTCCTCTTCTCCCTTCGCTCCTTCACC-GCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAA
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|74238223|gb|DT646137.1|DT646137
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|76292672|gb|DV032240.1|DV032240
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCEST: gi|78118287|gb|DV536673.1|DV536673
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|78083968|gb|DV512361.1|DV512361
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|148944695|gb|EC889832.2|EC889832
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|71302504|gb|DR787370.1|DR787370
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|91872814|gb|EB402771.1|EB402771
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|71316462|gb|DR794908.1|DR794908
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|148930227|gb|EC872669.2|EC872669
genomic: GACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|101393644|gb|EB818754.1|EB818754
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|211038846|gb|FL245342.1|FL245342
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|76918988|gb|DV167546.1|DV167546
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCEST: gi|71436489|gb|DR817539.1|DR817539
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
EST: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC GGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tcaaatgcagGGCAGAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGCCCCCTCCGCACGCTCGACCCCACCCAGGATCACAAGCTCATGTTCGGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtcctacttctcgatcttctagcactcgtgtgagcggttatttactgaggcggtcgctagtcggaaataatttcgcatcgatcctacatcagggta
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC