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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATGCAGTTGCGCAAGTGCTGCAACCATCCATATTTATTCCAAGGAGCTGAACCTGGGCCACCCTACACAACTGGTGAACATCTAATTGAGAATGCAGgtaacaccatgttattttgttttcataatagtaacatattttactacataatttatatgaatgcttattgacagtttttttgatatttacatag

Basic information

species Zea mays
transcript GRMZM2G010085_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010085_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 9
GCCATGCAGTTGCGCAAGTGCTGCAACCATCCATATTTATTCCAAGGAGCTGAACCTGGGCCACCCTACACAACTGGTGAACATCTAATTGAGAATGCAGgtaacaccatgttattttgttttcataatagtaacatattttactacataatttatatgaatgcttattgacagtttttttgatatttacatag
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||| ||||    ||||| |   | |       |  ||  |  |   |||     ||| | ||    | | |  | ||| | | | |             
GCCATGCAGTTGCGCAAGTGCTGCAACCATCCATATTTATTCCAAGGAGCAGAACCTGGTCCACCTTACACAACTGGTGAACATCTAGTTGAGAATGCTGgtatgttcatgtcacaatttccattgtactgttgccaaaggtacagttcaatatttaaccttccctcctcacaatatctgtag-----------

upper sequence: GRMZM2G010085_T01 (Zea mays), 5'ss of exon 6
lower sequence: 13113.m00246 (Oryza sativa), 5'ss of exon 9
GCCATGCAGTTGCGCAAGTGCTGCAACCATCCATATTTATTCCAAGGAGCTGAACCTGGGCCACCCTACACAACTGGTGAACATCTAATTGAGAATGCAGgtaacaccatgttattttgttttcataatagtaacatattttactacataatttatatgaatgcttattgacagtttttttgatatttacatag
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||| ||||    ||||| |   | |       |  ||  |  |   |||     ||| | ||    | | |  | ||| | | | |             
GCCATGCAGTTGCGTAAGTGCTGCAACCATCCATATTTATTCCAAGGAGCAGAACCTGGTCCACCTTACACAACTGGTGAACATCTAGTTGAGAATGCTGgtatgttcatgtcacaatttccattgtactgttgccaaaggtacagttcaatatttaaccttccctcctcacaatatctgtag-----------

upper sequence: GRMZM2G010085_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 5'ss of exon 9
GCCATGCAGTTGCGCAAGTGCTGCAACCATCCATATTTATTCCAAGGAGCTGAACCTGGGCCACCCTACACAACTGGTGAACATCTAATTGAGAATGCAGgtaacac-catgttattttgttttcataatagtaacatatt-ttactacataatttatatgaatgcttattgacagtttttttgatatttacatag
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||| || ||||||||||||||||||||||  |  |||    | | || ||  | ||| |    || | || || ||  | |   |   ||| | ||  ||  || ||||             
GCCATGCAATTGCGGAAGTGCTGCAACCATCCATATTTATTCCAAGGTGCTGAGCCTGGTCCACCCTATACCACTGGAGACCATCTAATTGAGAATGCAGgtactattcatccactctagtatttgtcataatttggtactatttctgcaatact-gcacatatgatcatgcactcttattttacag---------

upper sequence: GRMZM2G010085_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 9
GCCATGCAGTTGCGCAAGTGCTGCAACCATCCATATTTATTCCAAGGAGCTGAACCTGGGCCACCCTACACAACTGGTGAACATCTAATTGAGAATGCAGgtaa-caccatgttattttgttttcataatagtaacatattttactacataatttatatgaat---gcttattgacagtttttttgatatttacatag---
|| |||||  | ||||| || || || ||||||||| | |||||||| ||||||||||| || |||| ||| || || || ||||||||||| ||||| ||||| | | |  |   ||       ||| |    || |  |||      | ||  |||  |     | | |||  | ||| |    ||||||   |     
GCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTTCACTACAGGAGATCATCTAATTGAAAATGCTGgtaaactctacatacattaagagagatactgcagacgttctttttaggttgatgaataaaatctgagatcatttcctgttgtaaaaatattttgtttccag