1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CACGAGTTGGCGCCGGTCGTGGAGGAGCTGATTTCGCCGATGAACAGCCTGGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcgctcctaatcttacgcctcgatgccttcgtaggagaactaatcgagtggctgttctgtaaaaggtagctattccgactagctccccttgtt...
species | Zea mays |
transcript | GRMZM2G009021_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211342145|gb|FL091793.1|FL091793
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211344534|gb|FL091802.1|FL091802
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211342144|gb|FL091792.1|FL091792
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211342151|gb|FL091799.1|FL091799
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211342143|gb|FL091791.1|FL091791
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211342152|gb|FL091800.1|FL091800
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211342147|gb|FL091795.1|FL091795
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|30087498|gb|CB885704.1|CB885704
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGG-ATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|78121927|gb|DV540311.1|DV540311
genomic: GCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211342146|gb|FL091794.1|FL091794
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211344541|gb|FL091809.1|FL091809
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACKGCTGCCTCATGCACATCTTCAGCTTCCTGAGCMCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211342153|gb|FL091801.1|FL091801
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211344538|gb|FL091806.1|FL091806
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211117409|gb|FL123096.1|FL123096
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACRGCTGCCTCATGCACATCTTCAGCTTCCTGARCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211344535|gb|FL091803.1|FL091803
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211342149|gb|FL091797.1|FL091797
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCTCTTCCTTGCATGCCEST: gi|211344536|gb|FL091804.1|FL091804
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211344543|gb|FL091811.1|FL091811
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211344540|gb|FL091808.1|FL091808
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211344542|gb|FL091810.1|FL091810
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211116627|gb|FL123094.1|FL123094
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211342148|gb|FL091796.1|FL091796
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|29945972|gb|CB815913.1|CB815913
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211344539|gb|FL091807.1|FL091807
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCEST: gi|211342150|gb|FL091798.1|FL091798
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
EST: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAG ATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
genomic: GGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcg ... gaacctgcagATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGAGTTGGCGCCGGTCGTGGAGGAGCTGATTTCGCCGATGAACAGCCTGGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTGAGCCCAATCCCAGgttcgattcgctcctaatcttacgcctcgatgccttcgtaggagaactaatcgagtggctgttctgtaaaaggtagctattccgactagctccccttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT