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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCACGTACTACCTGCGGCGGAAGATCGCCGACGGCAGATTCACGGCGAGGGCCATCGCCGAGGTCGACCTCAACAAGTCCGAGCCGTGGGATCTCCCGGgtaatcatcatcggagaaaccaactgttaattaacctgttcatgtgtatatacacgcacatgtacatgcatgcatatgtagtaatcttttctcctctcttctctccttatttggaacatgcatgcgggagtgtcagaacgtaacaatttcttatattttccagtatatatataagtgatcgattatatatgcatgccag

Basic information

species Zea mays
transcript GRMZM2G008374_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008374_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g32260.2 (Oryza sativa), 5'ss of exon 2
ATCACGTACTACCTGCGGCGGAAGATCGCCGACGGCAGATTCACGGCGAGGGCCATCGCCGAGGTCGACCTCAACAAGTCCGAGCCGTGGGATCTCCCGGgtaatcatcatcggagaaaccaactgttaattaacctgttcatgtgtatatacacgcacatgtacatgcatgcatatgtagtaatcttttctcctctc-ttctctccttatttggaacatgcatgcgggagtgtcagaacgtaacaatttcttatattttccagtatatatataagtgatcgattatatatgcatgccag
||||| ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| |||||| |       |  ||  || |    |   |  ||||    || ||   |  |   |  |  ||     | ||  || || |||   || ||||   ||||||                                                                                              
ATCACCTACTACCTGCGGCAGAAGATCGCCGACGGCGGCTTCACGGCGAGGGCCATCGCCGAGGTCGATCTCAACAAGTGCGAGCCATGGGATCTCCCAGgtaatta-------attaattaattaaacaaacatgtgtttgcatgcatgatcttgtgaaattttatatgctcctacttaata-tctccccttctctggctctctctc--------------------------------------------------------------------------------------------

upper sequence: GRMZM2G008374_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ11746 (Selaginella moellendorffii), 5'ss of exon 1
ATCACGTACTACCTGCGGCGGAAGATCGCCGACGGCAGATTCACGGCGAGGGCCATCGCCGAGGTCGACCTCAACAAGTCCGAGCCGTGGGATCTCCCGGgtaatcatcatcggagaaaccaact-gttaattaacctgttcatgtgtat-atacacgcacatgtacatg-catgcatatgtagtaatcttttctcctctcttc-tctccttatttggaacatgcatgcgggagtgtcagaacgtaacaatttctt-atattttccagtatatatataagtgatcgattatatatgcatgccag
||||| | ||||||      |||| ||| | ||   | ||||  ||||   ||||||||||||||||| |||||||||| |||||| |||||||| || |||||        |||| |||   ||  |    |  |   |||   | ||| ||   | | ||    |  | | | | |  |    ||| |  |    |   ||| |  | ||    ||||| || |  ||      |  |  ||       |     | |||   |   | || | |   |  |   || |   | |  | |||
ATCACCTTCTACCTCGTCAAGAAGGTCGTCAACACAAAATTCGTGGCGCACGCCATCGCCGAGGTCGATCTCAACAAGTTCGAGCCATGGGATCTACCCGgtaa--------ggaggaactctctcatcttctctcgcattcgcttctatcatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcac-ttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcag

upper sequence: GRMZM2G008374_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ22540 (Selaginella moellendorffii), 5'ss of exon 1
ATCACGTACTACCTGCGGCGGAAGATCGCCGACGGCAGATTCACGGCGAGGGCCATCGCCGAGGTCGACCTCAACAAGTCCGAGCCGTGGGATCTCCCGGgtaatcatcatcggagaaaccaactgttaattaacctgttcatgtgtat-atacacgcacatgtacatg-catgcatatgtagtaatcttttctcctctcttc-tctccttatttggaacatgcatgcgggagtgtcagaacgtaacaatttctt-atattttccagtatatatataagtgatcgattatatatgcatgccag
||||| | ||||||      |||| ||| | ||   | |||| |||||   ||||||||||||||||| |||||||||| |||||| |||||||| || |||||        |  |||  |  |  |    |  |   ||| | | ||| ||   | | ||    |  | | | | |  |    ||| |  |    |   ||| |  | ||    ||||| || |  ||      |  |  ||       |     | |||   |   | || | |   |  |   || |   | |  | |||
ATCACCTTCTACCTCGTCAAGAAGGTCGTCAACACAAAATTCGCGGCGCACGCCATCGCCGAGGTCGATCTCAACAAGTTCGAGCCATGGGATCTACCCGgtaa-------ggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcac-ttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcag