Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGAGGCAGGGGAGCAGCATCCACAACCACAAGCCATGGCGGGGAGGGCCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccacatccaccccaccacccgccgcctccgctaaattatccttgcgattgagcagtagaggcgtgcccccgaggtgttttatttagctgtttctgctggatccagccaacatctgggttgcatctggggatccgcgattatctaaacgcacgctttgtcacctattcttgcag

Basic information

species Zea mays
transcript GRMZM2G008232_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008232_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT4G02620.1 (Arabidopsis thaliana), 5'ss of exon 2
CGAGGAGGCAGGGGAGCAGCATCCACAACCACAAGCCATGGCGGGGAGGGCCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccacatccaccccaccacccgccgcctccgctaaattatccttgcgattgagcagtagaggcgtgcccccgaggtgttttatttagctgtttctgctggatccagccaacatctgggttgcatctggggatccgcgattatctaaacgcacgctttgtcacctattcttgcag
                          || || |    ||||| ||||| || |  |||||  ||  |||||| |||||||||||||| |||||||| |||||||     || |     ||||     | | ||   | |  | |      |||  || | | ||||     ||   || |   || ||||| |  || ||        |     ||| ||| |                                                       
-----------------------TTGAATCAAA---TATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCCTCATCGCAATGATCGCCGATGAGgtaa-----attcgtt--accaaaaaactcatctttttatatgtt-----gatgaaggatttgaggt---tccattagtttgattctttagataattttg--------atttttcatttggat-------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211053903|gb|FL039087.1|FL039087
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211335219|gb|FL322948.1|FL322948
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211062166|gb|FL359472.1|FL359472
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211140146|gb|FL356433.1|FL356433
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211282928|gb|FL312227.1|FL312227
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|60339041|gb|DN206014.1|DN206014
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|8318853|gb|BE025493.1|BE025493
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|14243038|gb|BG840782.2|BG840782
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211099408|gb|FL366876.1|FL366876
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|37384202|gb|CF629158.1|CF629158
EST:     AACATTCCCCCACTAA-TACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: AACA-T-CCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|16919403|gb|BM074173.1|BM074173
EST:     CTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211460459|gb|FL348754.1|FL348754
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211428176|gb|FL360597.1|FL360597
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211101646|gb|FL354091.1|FL354091
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211149393|gb|FL319852.1|FL319852
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211013679|gb|FL365589.1|FL365589
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211531489|gb|FL328404.1|FL328404
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|16916798|gb|BM072995.1|BM072995
EST:     CCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211007902|gb|FL358956.1|FL358956
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211253323|gb|FL352234.1|FL352234
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|78543770|gb|DV621268.1|DV621268
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|213175109|gb|FM181707.1|FM181707
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|60359048|gb|DN226021.1|DN226021
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|60348716|gb|DN215689.1|DN215689
EST:     CCAACATCCCCACTAACAATTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATTTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211157235|gb|FL334268.1|FL334268
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACYGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|12046517|gb|BF728656.1|BF728656
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|8318852|gb|BE025492.1|BE025492
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGTGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211094385|gb|FL362909.1|FL362909
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211098079|gb|FL308902.1|FL308902
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|9742821|gb|BE518969.1|BE518969
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACTAT                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|45568036|gb|CK985870.1|CK985870
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211397944|gb|FL165812.1|FL165812
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211326750|gb|FL338498.1|FL338498
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211435686|gb|FL350107.1|FL350107
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|37387305|gb|CF630845.1|CF630845
EST:     TCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: TCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|84980633|gb|DW530982.1|DW530982
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|60336696|gb|DN203669.1|DN203669
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|40302858|gb|CK347245.1|CK347245
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|6695648|gb|AW288756.1|AW288756
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|15499545|gb|BI596058.1|BI596058
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211397945|gb|FL165813.1|FL165813
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|8383191|gb|BE056134.1|BE056134
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|60344408|gb|DN211381.1|DN211381
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211337917|gb|FL349099.1|FL349099
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211103208|gb|FL316249.1|FL316249
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTMACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|5608118|gb|AI901785.1|AI901785
EST:     AACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACGCCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: AACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211397947|gb|FL165815.1|FL165815
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211397949|gb|FL165817.1|FL165817
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|6696002|gb|AW289110.1|AW289110
EST:     CCGCCCTCATCGCAATCATCGCCGACGAG                         GAC-CCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211455717|gb|FL365505.1|FL365505
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCARTGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211397943|gb|FL165811.1|FL165811
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211222799|gb|FL343761.1|FL343761
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|32863646|gb|CF003328.1|CF003328
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|47962347|gb|CN845056.1|CN845056
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|15590273|gb|BI674889.1|BI674889
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCTTCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|4886118|gb|AI677238.1|AI677238
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211397946|gb|FL165814.1|FL165814
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATMGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211497191|gb|FL310114.1|FL310114
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211397950|gb|FL165818.1|FL165818
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|60342979|gb|DN209952.1|DN209952
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|26455833|gb|CA827416.1|CA827416
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211470674|gb|FL353020.1|FL353020
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|37377344|gb|CF625269.1|CF625269
EST:     CAACATCCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CAACAT-CCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211059845|gb|FL039109.1|FL039109
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|14242887|gb|BG840218.2|BG840218
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|60342748|gb|DN209721.1|DN209721
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|108953748|gb|EC364871.1|EC364871
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACCGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211529121|gb|FL350184.1|FL350184
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGACTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211541441|gb|FL362035.1|FL362035
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211274167|gb|FL331318.1|FL331318
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211419074|gb|FL312380.1|FL312380
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|37392410|gb|CF633454.1|CF633454
EST:     CAACATCCCCCACTAAC-ACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CAACAT-CCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211053900|gb|FL039084.1|FL039084
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|37379190|gb|CF626327.1|CF626327
EST:     CTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|211316711|gb|FL359234.1|FL359234
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
EST: gi|60400047|gb|DN232854.1|DN232854
EST:     CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAG                         GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC
genomic: CCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 687

CGAGGAGGCAGGGGAGCAGCATCCACAACCACAAGCCATGGCGGGGAGGGCCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1316

CGAGGAGGCAGGGGAGCAGCATCCACAACCACAAGCCATGGCGGGGAGGGCCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 722

CGAGGAGGCAGGGGAGCAGCATCCACAACCACAAGCCATGGCGGGGAGGGCCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1514

CGAGGAGGCAGGGGAGCAGCATCCACAACCACAAGCCATGGCGGGGAGGGCCAACATCCCCACTAACAACTCCGCCCTCATCGCAATCATCGCCGACGAGgtaacccaca ... attcttgcagGACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA