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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCCGGCGCCGACGGAACTCGAGCGGTGGCGTGACCTCGACATGCTCTTGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggactggcgtcgatttctcctccgttttttttctcgcgttcttacttctaagcgattgatctcgttgattgatccgcgcgcgcag

Basic information

species Zea mays
transcript GRMZM2G007915_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211126342|gb|FL147241.1|FL147241
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126347|gb|FL147246.1|FL147246
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTAGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|148940271|gb|EC885047.2|EC885047
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126341|gb|FL147240.1|FL147240
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127274|gb|FL147261.1|FL147261
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126350|gb|FL147249.1|FL147249
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTAGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126343|gb|FL147242.1|FL147242
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTAGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|76917087|gb|DV166673.1|DV166673
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|71431174|gb|DR812224.1|DR812224
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|149099069|gb|EE185089.2|EE185089
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127266|gb|FL147253.1|FL147253
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTAGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|78116520|gb|DV534907.1|DV534907
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127270|gb|FL147257.1|FL147257
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127273|gb|FL147260.1|FL147260
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTAGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126352|gb|FL147251.1|FL147251
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCSGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTAGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127276|gb|FL147263.1|FL147263
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127265|gb|FL147252.1|FL147252
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTANTTYTTGGGCGCGGG
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGT-GGGCGCGGG
EST: gi|211127271|gb|FL147258.1|FL147258
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTAGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|71439588|gb|DR820638.1|DR820638
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126339|gb|FL147238.1|FL147238
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|22545492|gb|BU097851.1|BU097851
EST:     CTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGANCTACTGNGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: CTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126345|gb|FL147244.1|FL147244
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTAGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127269|gb|FL147256.1|FL147256
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|78080951|gb|DV509363.1|DV509363
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|78084926|gb|DV513319.1|DV513319
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|71440225|gb|DR821275.1|DR821275
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126349|gb|FL147248.1|FL147248
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|76287587|gb|DV027155.1|DV027155
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|78124196|gb|DV542580.1|DV542580
EST:     TGTCCCGCCCTGAAAACCTCGGGGAGGCCATTTTCGATCCCACCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|148931543|gb|EC874605.2|EC874605
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127268|gb|FL147255.1|FL147255
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTAGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126346|gb|FL147245.1|FL147245
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127279|gb|FL147266.1|FL147266
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCKAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127275|gb|FL147262.1|FL147262
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127272|gb|FL147259.1|FL147259
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGG
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCT-ACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGG
EST: gi|211126340|gb|FL147239.1|FL147239
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTAGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126351|gb|FL147250.1|FL147250
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTAGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|148942975|gb|EC888022.2|EC888022
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127278|gb|FL147265.1|FL147265
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|37421889|gb|CF648648.1|CF648648
EST:     TGTCCCGCCCCGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126344|gb|FL147243.1|FL147243
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211127267|gb|FL147254.1|FL147254
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|71419962|gb|DR804958.1|DR804958
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|211126348|gb|FL147247.1|FL147247
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTAGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|148931538|gb|EC874596.2|EC874596
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
EST: gi|71311094|gb|DR791861.1|DR791861
EST:     TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGC                         CTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC
genomic: TGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 272

ACAGCCGGCGCCGACGGAACTCGAGCGGTGGCGTGACCTCGACATGCTCTTGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGCGGGCTTGGCTGCGAGCTCCTCAAGGACCTGGCTCTCTCCGGGTTTAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 163

ACAGCCGGCGCCGACGGAACTCGAGCGGTGGCGTGACCTCGACATGCTCTTGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGCGGGCTTGGCTGCGAGCTCCTCAAGGACCTGGCTCTCTCCGGGTTTAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 100

ACAGCCGGCGCCGACGGAACTCGAGCGGTGGCGTGACCTCGACATGCTCTTGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGCGGGCTTGGCTGCGAGCTCCTCAAGGACCTGGCTCTCTCCGGGTTTAAGA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 170

ACAGCCGGCGCCGACGGAACTCGAGCGGTGGCGTGACCTCGACATGCTCTTGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggac ... gcgcgcgcagCTGCGAGACCTACTGGGGAGCCTCGTGGAGGTTTTGGTTGTGGGCGCGGGCGGGCTTGGCTGCGAGCTCCTCAAGGACCTGGCTCTCTCCGGGTTTAAGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGCCGGCGCCGACGGAACTCGAGCGGTGGCGTGACCTCGACATGCTCTTGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCgtgagtggactggcgtcgatttctcctccgttttttttctcgcgttcttacttctaagcgattgatctcgttgattgatccgcgcgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG