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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCGGGACTTCAAGCGGTTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggccgcctatttctgtgatgttaggttagctagcctaaggatctgatgaggtgcgaggctgcaatacttacggtgctgactgtgcttttgctattgtcgtttgttgcgattctgcag

Basic information

species Zea mays
transcript GRMZM2G007260_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g57790.1 (Oryza sativa), 5'ss of exon 1
TGATGCGGGACTTCAAGCGGTTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatca------------ggccgcctatttctgtgatgttaggttagctagcctaagg-atctgatgaggtgcgaggctgcaatacttacggtgctgactgtgcttttgctat----tgtcgtttgttgcgattctgcag----------------------------------
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||             ||| ||    |||  |  | ||||||    |||| | || ||||      |   | |  |    || |    |||  |    |  ||||  | |    ||| | ||| |  | |||||  |                                  
TGATGCGGGACTTCAAGCGGCTGCAGCAGGACCCGCCCGCCGGAATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtagccacccacgcgccgtagccaccctcatctcaggcgctaggttttggagccgaggggatctcgcagagcttgtgattttcctattcgttgtggagttattttttttaattttttgtgtgggttgatttggttctgatgtcgtttgcttgtcatgtctggtacgattttgcag

upper sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S91_87V6.1 (Physcomitrella patens), 5'ss of exon 1
TGATGCGGGACTTCAAGCGGTTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggccgcctatttctgtgatgttaggttagctagcctaaggatctgatgaggtgcgaggctgcaatacttacggtgctgactgtgcttttgctattgtcgtttgttgcgattctgcag
||||||| |||||||||||  ||||||| || || || ||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||||||||||||||  ||  |  |     ||   ||| || | |  ||  ||  ||     ||    |||  ||    | ||| | |  || || ||   |     ||    ||||| ||               
TGATGCGCGACTTCAAGCGCCTGCAGCATGATCCTCCGGCCGGCATCAGCGGCGCCCCGCAGGACAACAACATCATGTTGTGGAATGCTGTCATATTCGGgtacccaaactcc-----tccccgattttcgttctgcatgctcaa----ttgtgtcggtatgaatgcgaaattcgtggggcgcggag-atttgcatggcggtgtcggttt--------------

upper sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S219_106V6.1 (Physcomitrella patens), 5'ss of exon 1
TGATGCGGGACTTCAAGCGGTTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggccgcctatttctgtgatgttaggttagctagcctaaggatctgatgaggtgcgaggctgcaatacttacggtgctgactgtgcttttgctattgtcgtttgttgcgattctgcag
||||||| ||||||||||| ||||| || || || || ||||||||||||||||| ||||| |||||||| |||||||| ||||| || || ||||||||||||  | |   |    |  | |  | ||  |||   | |  |  ||   || || ||           ||| |    || |  |   | ||   |   | ||||| || |             
TGATGCGTGACTTCAAGCGCTTGCAACATGATCCTCCGGCCGGCATCAGCGGCGCTCCGCAGGACAACAATATCATGCTGTGGAATGCTGTGATATTCGGgtaacgaagtgcctccctggtttcgttttttgttcaattgtgtccggtcgtggtgcgg-----------aattcgccgggcgtgggaggcgcacgtcggagtgtcggtttt-------------

upper sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ16328 (Selaginella moellendorffii), 5'ss of exon 1
TGATGCGGGACTTCAAGCGGTTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgta---atcaggccgcctatttctgtgatgttaggttagctagcctaaggatctgatgaggtgcgaggctgcaatacttacggtgctgactgtgcttttgctattgtcgtttgttgcgattctgcag
||||||| |||||||||||  | || || || || ||||| || ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||   ||   |||||      ||  | | |     || ||  | |       || ||  |                                                                  
TGATGCGAGACTTCAAGCGCCTCCAACACGATCCTCCCGCGGGAATCAGCGGCGCGCCGCAGGACAACAACATCATGCTCTGGAACGCGGTGATCTTCGGgtaggaatgtagccgctcggcactagggtatcgatctaact--cttggtttcgtgttgcag------------------------------------------------------------------

upper sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ17802 (Selaginella moellendorffii), 5'ss of exon 1
TGATGCGGGACTTCAAGCGGTTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgta---atcaggccgcctatttctgtgatgttaggttagctagcctaaggatctgatgaggtgcgaggctgcaatacttacggtgctgactgtgcttttgctattgtcgtttgttgcgattctgcag
||||||| |||||||||||  | || || || || ||||| || ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||   ||   |||||      ||  | | |     || ||  | |       || ||  |                                                                  
TGATGCGAGACTTCAAGCGCCTCCAACACGATCCTCCCGCGGGAATCAGCGGCGCGCCGCAGGACAACAACATCATGCTCTGGAACGCGGTGATCTTCGGgtaggaatgtagccgctcgacactagggtatcgatctaact--cttggtttcgtgttgcag------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71448180|gb|DR829230.1|DR829230
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|22521069|gb|BU079880.1|BU079880
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|20803162|gb|BQ294212.1|BQ294212
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211160852|gb|FL355935.1|FL355935
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211209638|gb|FL170006.1|FL170006
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211158663|gb|FL318093.1|FL318093
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|89759914|gb|DY688576.1|DY688576
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|74241480|gb|DT649394.1|DT649394
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|50332498|gb|CO527624.1|CO527624
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|74241479|gb|DT649393.1|DT649393
EST:     GGCGCGCCGCACGACAACAACATCATGCTTTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211212202|gb|FL170018.1|FL170018
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|44900351|gb|CK826896.1|CK826896
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211209635|gb|FL170003.1|FL170003
EST:     GGCGCGCCS-ACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTTGGAC
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGAC
EST: gi|4624364|gb|AI615197.1|AI615197
EST:     GGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|71299516|gb|DR785767.1|DR785767
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|7031256|gb|AW461144.1|AW461144
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211209646|gb|FL170014.1|FL170014
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211416709|gb|FL320472.1|FL320472
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|71299514|gb|DR785766.1|DR785766
EST:     GGCGCGCCGCACGACAACAACATCATGTTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211209634|gb|FL170002.1|FL170002
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|149112233|gb|EE191289.2|EE191289
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|60401065|gb|DN233872.1|DN233872
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211209637|gb|FL170005.1|FL170005
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|12972475|gb|BG268000.1|BG268000
EST:     CTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: CTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|148966066|gb|EE017005.2|EE017005
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211212200|gb|FL170016.1|FL170016
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211209639|gb|FL170007.1|FL170007
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211209642|gb|FL170010.1|FL170010
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|13149803|gb|BG320125.1|BG320125
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|40337033|gb|CK371103.1|CK371103
EST:     CGCCGCTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: CGCCG-TCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|37397476|gb|CF636037.1|CF636037
EST:     CGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: CGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211212201|gb|FL170017.1|FL170017
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211209644|gb|FL170012.1|FL170012
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|14701443|gb|BI233861.1|BI233861
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|50332499|gb|CO527625.1|CO527625
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG
EST: gi|211500859|gb|FL344778.1|FL344778
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtaatcaggc ... gattctgcagGCCGGATGACACGCCGTGGGACGGAG