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TACGCCGGAGGAGCGCGACGAGGTAGAGAGGGTACGCCAGGAGTTCTCCGACCACCGCTTCCAGAGGAGAGAGTCGGCCGACCTCCTCATGCGCATGCAGgtatacactattatgactattcaaacatgatggacagagcaaaaaaaaaaaatctcataagggctaaattaagccgctacattgatataatcttactaaa...
species | Zea mays |
transcript | GRMZM2G006937_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCACCGCTTCCAGAGGAGAGAGTCGGCCGACCTCCTCATGCGCATGCAG TGCGCAAAGCAGAACAGATCTCAACGTCGTGATCTGCCACGCATCAAGCTTEST: gi|211012103|gb|FL418129.1|FL418129
genomic: ACCACCGCTTCCAGAGGAGAGAGTCGGCCGACCTCCTCATGCGCATGCAGgtatacacta ... ttcgttgtagTGCGCAAAGCAGAACAGATCTCAACGTCGTGATCTGCCACGCATCAAGCTT
EST: ACCACCGCTTCCAGAGGAGAGAGTCGGCCGACCTCCTCATGCGCATGCAG TGCGCAAAGCAGAACAGATCTCAACGTCGTGATCTGCCACGCATCAAGCTTEST: gi|211518858|gb|FL413399.1|FL413399
genomic: ACCACCGCTTCCAGAGGAGAGAGTCGGCCGACCTCCTCATGCGCATGCAGgtatacacta ... ttcgttgtagTGCGCAAAGCAGAACAGATCTCAACGTCGTGATCTGCCACGCATCAAGCTT
EST: ACCACCGCTTCCAGAGGAGAGAGTCGGCCGACCTCCTCATGCGCATGCAG TGCGCAAAGCAGAACAGATCTCAACGTCGTGATCTGCCACGCATCAAGCTT
genomic: ACCACCGCTTCCAGAGGAGAGAGTCGGCCGACCTCCTCATGCGCATGCAGgtatacacta ... ttcgttgtagTGCGCAAAGCAGAACAGATCTCAACGTCGTGATCTGCCACGCATCAAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGCCGGAGGAGCGCGACGAGGTAGAGAGGGTACGCCAGGAGTTCTCCGACCACCGCTTCCAGAGGAGAGAGTCGGCCGACCTCCTCATGCGCATGCAGgtatacactattatgactattcaaacatgatggacagagcaaaaaaaaaaaatctcataagggctaaattaagccgctacattgatataatcttactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa