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CAAGTTGCCTCGTGCTCTGCTTCTTCGGTTTTCAGGAGCGTCGGCCATTGCTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttcttgacgcggtctgcgatccgattgtttcggctcccttgcacaccattgggactcgttacccatctcgtggactcttctgtttcttctccttt...
species | Zea mays |
transcript | GRMZM2G006468_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGACCATTGGGACTCCCTCGTGCGTTTTCC-AATCAG GTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAEST: gi|211186705|gb|FL252850.1|FL252850
genomic: CAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcagGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAA
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG GTTGATGGCGATAGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAEST: gi|37420659|gb|CF648025.1|CF648025
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcagGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAA
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG GTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAEST: gi|211522061|gb|FL312388.1|FL312388
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcagGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAA
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG GTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAEST: gi|14242681|gb|BG840373.2|BG840373
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcagGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAA
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG GTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAEST: gi|211436012|gb|FL361903.1|FL361903
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcagGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAA
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG GTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAEST: gi|211186703|gb|FL252848.1|FL252848
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcagGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAA
EST: AGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGTCAGEST: gi|211316809|gb|FL363634.1|FL363634
genomic: AGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A-TCAGgttcgttctt ... atgtagt
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG GTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAEST: gi|211453015|gb|FL324462.1|FL324462
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcagGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAA
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG GTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAEST: gi|211186707|gb|FL252852.1|FL252852
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcagGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAA
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGTCAGEST: gi|76010926|gb|DT938096.1|DT938096
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A-TCAGgttcgttctt ... atgtagt
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGTCAGEST: gi|89755427|gb|DY685847.1|DY685847
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A-TCAGgttcgttctt ... atgtagt
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG GTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAAGGCAAGCCAAEST: gi|13178341|gb|BG349599.1|BG349599
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcagGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAA
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG GTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAEST: gi|211134484|gb|FL356345.1|FL356345
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcagGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAA
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG GTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAEST: gi|74242180|gb|DT650094.1|DT650094
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcagGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAA
EST: TGGGACTCCCTCGTGCGTTTTCCAAATCAG GTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAEST: gi|32918930|gb|CF023742.1|CF023742
genomic: TGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcagGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAA
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGTCAGEST: gi|211186704|gb|FL252849.1|FL252849
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A-TCAGgttcgttctt ... atgtagt
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG TEST: gi|211186704|gb|FL252849.1|FL252849
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcag-
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG TEST: gi|211186704|gb|FL252849.1|FL252849
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcag-
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG TEST: gi|211186704|gb|FL252849.1|FL252849
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcag-
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG TEST: gi|71774337|gb|DR972215.1|DR972215
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... atgtagtcag-
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGTCAGEST: gi|78113266|gb|DV531659.1|DV531659
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A-TCAGgttcgttctt ... atgtagt
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGTCAG
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A-TCAGgttcgttctt ... atgtagt
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGTTGCCTCGTGCTCTGCTTCTTCGGTTTTCAGGAGCGTCGGCCATTGCTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttcttgacgcggtctgcgatccgattgtttcggctcccttgcacaccattgggactcgttacccatctcgtggactcttctgtttcttctccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctccctt