1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCACTCTGGCTTCGCCAAGCGCGGCGAGGACTACTTCCTCGTCAAGCCCGACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccacttttccccctaagatattcttttggtgtctcgtttgggttcggtgatgtgatggtctgtttgtttggtttgacggatctgcggttcgcag
species | Zea mays |
transcript | GRMZM2G006429_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCTTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|37418869|gb|CF647107.1|CF647107
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCCGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|31354352|gb|CD438709.1|CD438709
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|211035342|gb|FL198977.1|FL198977
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGTTGTTCAGCAAGGAGAAAEST: gi|76281727|gb|DV021295.1|DV021295
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|211032898|gb|FL198967.1|FL198967
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACC-TTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGTCACAATGGCGTGTCGGCGGCGEST: gi|71331543|gb|DR802616.1|DR802616
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCG
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|211035339|gb|FL198974.1|FL198974
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACC-TTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGEST: gi|50331894|gb|CO527020.1|CO527020
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGG
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|50332586|gb|CO527712.1|CO527712
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|71773439|gb|DR971341.1|DR971341
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|148995556|gb|EE034750.2|EE034750
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|211035345|gb|FL198980.1|FL198980
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCAEST: gi|89106849|gb|DY577066.1|DY577066
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCTTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|211037785|gb|FL198990.1|FL198990
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTEST: gi|71428998|gb|DR810048.1|DR810048
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTT
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|71438441|gb|DR819491.1|DR819491
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|78123111|gb|DV541495.1|DV541495
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|67032963|gb|CO461712.1|CO461712
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|211037782|gb|FL198987.1|FL198987
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAGGGAGAAAEST: gi|149079564|gb|EE168552.2|EE168552
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|94472234|gb|EB701192.1|EB701192
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|149045413|gb|EE047836.2|EE047836
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|211035348|gb|FL198983.1|FL198983
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGTCACAATGGCGTGTCEST: gi|101394557|gb|EB819213.1|EB819213
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTC
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|74233458|gb|DT641372.1|DT641372
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|71448151|gb|DR829201.1|DR829201
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|21843276|gb|BQ703857.1|BQ703857
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCTTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|211035346|gb|FL198981.1|FL198981
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCEST: gi|211037780|gb|FL198985.1|FL198985
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGC
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGTCACAATGGCGTGTCGGEST: gi|211035335|gb|FL198970.1|FL198970
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGG
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGEST: gi|149108127|gb|EE292476.2|EE292476
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGG
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|211037783|gb|FL198988.1|FL198988
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|211035337|gb|FL198972.1|FL198972
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGTCACAATGGCGTGTCGGCEST: gi|211035344|gb|FL198979.1|FL198979
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGC
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGTCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAAEST: gi|71323567|gb|DR798450.1|DR798450
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
EST: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCT GTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
genomic: ACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccac ... cggttcgcagGTATTCGACGGCCACAATGGCGTGTCGGCGGCGGTGTTCAGCAAGGAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACTCTGGCTTCGCCAAGCGCGGCGAGGACTACTTCCTCGTCAAGCCCGACTGCCTCCGCGTCCCCGGAGACCCTTCCTCCTCTTTCTCCGTCTTCGCTgtaggcccacttttccccctaagatattcttttggtgtctcgtttgggttcggtgatgtgatggtctgtttgtttggtttgacggatctgcggttcgcag
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