Sequence
atgc intronic sequence ATGC exonic sequenceGTCTATGGCGGCTGCACTGGGCGCCGTGCTCCGGCGGCTGCATACGGCGGCGGCGCAGCCCCCTCGCCTGACGAAATTCGCGCTGCACCCGCCCAAATTCgtgagtctccgcttcccagacgaccagcgcttcctcctcccccacatccgtagatcctgcctacctcaggtcttacctgattcatgcggctctctactgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G006277_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g67730.1 (Oryza sativa), 5'ss of exon 1
---GTCTATGGCGGCTGCACTGGGCGCCGTGCTCCGGCGGCTGCATACGGCGGCGGCGCAGCCCCCTCGCCTGACGAAATTCGCGCTGCACCCGCCCAAATTCgtgagtctccgcttcccagacgaccagcgcttcctcctcccccacatccgtagatcctgcctacctcaggtcttacctgattcatgcggctctctactgc-
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GATGGGCGCGGCGGTC-CGGCGGATGC-ACGCCGCAGCGGCGGCG-GCGGCGGCGGCGCAGCCCCCGCGCCTGACGAAGCTTGCGCTGCACCCGCCCAGATCGgtgagttcctcctcctccg-ctctcggcggctaatttcttcccgcttagatcccgtgcgctttgcctgttccttgcttccttcctactgttggttggtggt
upper sequence: GRMZM2G006277_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g10430.1 (Oryza sativa), 5'ss of exon 1
GTCTATGGCGGCTGCACTGGGCGCCGTGCTCCGGCGGCTGCATACGGCG-----GC-GGCGCAGCCCCCTCGCCTGACGAAATTCGCGCTGCACCCGCCCAAATTCgtgagtctccgcttcccagacgaccagc-gc-ttcctcctcccccacatccgtagatcctgcctacctcaggtcttacctgattcatgcggctctctactgc
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---TGCAGCGA-TGGGCGCGGCG--GTGGTCCGGCGGCTCCACGCGGCGCAGGCGCAGGCGCAGCCCCCGCGGCTGACGAAGCTCGCGCTTCGCGCGCCCAAATTCgtgagttccttcccctcccaaaagcagttgcactgttccaatcccttgttca-acgtcgcggcgacttgctggtgaacgagatt-acgagggtatatgacaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14244208|gb|BG842217.2|BG842217EST: CGGCGCAGCCCCCTCGCCTGACGAAATTCGCGCTGCACCCGCCCAAATTC CAGAATTTTTCAGAGTATACAGCCCAGCAGCTGATAGCAAAATCCGATCAG
genomic: CGGCGCAGCCCCCTCGCCTGACGAAATTCGCGCTGCACCCGCCCAAATTCgtgagtctcc ... cacctgtcagCAGAATTTCTCAGAGTATACAGCCCAGCAGCTGATAGCAAAATCCGATCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTATGGCGGCTGCACTGGGCGCCGTGCTCCGGCGGCTGCATACGGCGGCGGCGCAGCCCCCTCGCCTGACGAAATTCGCGCTGCACCCGCCCAAATTCgtgagtctccgcttcccagacgaccagcgcttcctcctcccccacatccgtagatcctgcctacctcaggtcttacctgattcatgcggctctctactgc
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