1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
TTTGGAAATAGAGGCCACCCAGACAGCAGCCCTCAAGGTTGATGCCTCGCCACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAGgtgaggcagtagtttatcggtagatgctagttcctatgttttaccacatataatcagaaagaataatccaaatatactgcatggcctactgtag
species | Zea mays |
transcript | GRMZM2G006130_T05 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAG GAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAACEST: gi|32844992|gb|CD984673.1|CD984673
genomic: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAGgtgaggcagt ... cctactgtagGAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAAC
EST: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAG GAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAACEST: gi|32929289|gb|CF034101.1|CF034101
genomic: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAGgtgaggcagt ... cctactgtagGAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAAC
EST: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAG GAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAACEST: gi|88755664|gb|DY539805.1|DY539805
genomic: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAGgtgaggcagt ... cctactgtagGAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAAC
EST: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAG GAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAACEST: gi|32844324|gb|CD984005.1|CD984005
genomic: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAGgtgaggcagt ... cctactgtagGAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAAC
EST: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAG GAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAACEST: gi|211170721|gb|FL129164.1|FL129164
genomic: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAGgtgaggcagt ... cctactgtagGAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAAC
EST: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAG GAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAACEST: gi|91051534|gb|EB161952.1|EB161952
genomic: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAGgtgaggcagt ... cctactgtagGAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAAC
EST: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAG GAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAAC
genomic: CACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAGgtgaggcagt ... cctactgtagGAGATCAACCATGCAGGAGCTGGTGGCATATGGGCAGAGCTTGTCAGTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGAAATAGAGGCCACCCAGACAGCAGCCCTCAAGGTTGATGCCTCGCCACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAGgtgaggcagtagtttatcggtagatgctagttcctatgttttaccacatataatcagaaagaataatccaaatatactgcatggcctactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA