Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGCGGCGGAATCGGCGCCGGCGGGAGGCAGGCATGGAGGACCTGAGCGTGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccccgtcccctcgatctggccacgccccctttccgttctgtctgcaattcttgtagcacggaaggttctagctagtctcctcgtttgcagctc...

Basic information

species Zea mays
transcript GRMZM2G005737_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G005737_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g01840.1 (Oryza sativa), 5'ss of exon 1
AGGGCGGCGGAATCGGCGCCGGCGGGAGGCAGGCATGGAGGACCTGAGCGTGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccccgtcccctcgatctggccacgccccctttccgttctgtctgcaattcttgtagcacggaaggttctagctagtctcctcgtttgcagctc---
  ||||  || ||||||| ||  | ||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||   |||   |||     ||  | |  |    |       |||| |    ||||| |       |   |||  || | | | | |   | ||| |    
GAGGCGAGGGCATCGGCGGCGAGGCGAGGCGGCCATGGAGGATCTGAGCGTGGAGGAGCTCGCCTCCAATCTCTCCACCTACAAGGAGCAGCTCCGCGAGgtctcgcgccctaacccctatcctacctat-ctatgtggtgaagctgtttttt-ttcttctcctttaaactcttcctgcgaattttccc-cgtacagtttcac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211368456|gb|FL037566.1|FL037566
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211144983|gb|FK968676.1|FK968676
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211144990|gb|FK968683.1|FK968683
EST:     GGAGGAGCTCGCCTCCAACCTCTCACACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: GGAGGAGCTCGCCTCCAACCTCTC-CACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211144986|gb|FK968679.1|FK968679
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211371102|gb|FL037574.1|FL037574
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211144976|gb|FK968669.1|FK968669
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211147843|gb|FK968702.1|FK968702
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211146425|gb|FK968698.1|FK968698
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211146413|gb|FK968686.1|FK968686
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211144978|gb|FK968671.1|FK968671
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211371099|gb|FL037571.1|FL037571
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|71449332|gb|DR830382.1|DR830382
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211146412|gb|FK968685.1|FK968685
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211371101|gb|FL037573.1|FL037573
EST:     GGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCGAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: GGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGC-AGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|148939314|gb|EC883829.2|EC883829
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|93282956|gb|EB675220.1|EB675220
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211368451|gb|FL037561.1|FL037561
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211368454|gb|FL037564.1|FL037564
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211146421|gb|FK968694.1|FK968694
EST:     TGGAGGANCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|78075367|gb|DV503801.1|DV503801
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|31357633|gb|CD441990.1|CD441990
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211147844|gb|FK968703.1|FK968703
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211368458|gb|FL037568.1|FL037568
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211146414|gb|FK968687.1|FK968687
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211143551|gb|FK968667.1|FK968667
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211146417|gb|FK968690.1|FK968690
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211144987|gb|FK968680.1|FK968680
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211147849|gb|FK968708.1|FK968708
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211147840|gb|FK968699.1|FK968699
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211144989|gb|FK968682.1|FK968682
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211144977|gb|FK968670.1|FK968670
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAT                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211143550|gb|FK968666.1|FK968666
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211368457|gb|FL037567.1|FL037567
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211371100|gb|FL037572.1|FL037572
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211147846|gb|FK968705.1|FK968705
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211144984|gb|FK968677.1|FK968677
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211144981|gb|FK968674.1|FK968674
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211144982|gb|FK968675.1|FK968675
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211144980|gb|FK968673.1|FK968673
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211146415|gb|FK968688.1|FK968688
EST:     T-GAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211147848|gb|FK968707.1|FK968707
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211146420|gb|FK968693.1|FK968693
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211144985|gb|FK968678.1|FK968678
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
EST: gi|211371098|gb|FL037570.1|FL037570
EST:     TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAG                         GTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT
genomic: TGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccc ... tgcatttcagGTCAAGAAGCTTATCAAGGAGAAGAAGGATGATGCTGGAATTTCTGAATAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGGCGGCGGAATCGGCGCCGGCGGGAGGCAGGCATGGAGGACCTGAGCGTGGAGGAGCTCGCCTCCAACCTCTCCACCTACAAAGAGCAGCTACGCGAGgtctcttccccgtcccctcgatctggccacgccccctttccgttctgtctgcaattcttgtagcacggaaggttctagctagtctcctcgtttgcagctc

- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT