Sequence
atgc intronic sequence ATGC exonic sequenceTTGCCCCTCACCGCCGTGCTCGACGCCGACAACCGCACGCTCGGAACGCAGTGGTACCAACTGCAGCCCAAGAGCAAGAAGTCCAAGCTCAAGGATTGCGgtaaggacacaccttgccacttttcttgttttatttatttgcacttcattcaatttgtgatttttgtttcccgtctagttagttagtcagttaattagtc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G005195_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g19400.1 (Oryza sativa), 5'ss of exon 1
TTGCCCCTCACCGCCGTGCTCGACGCCGACAACCGCACGCTCGGAACGCAGTGGTACCAACTGCAGCCCAAGAGCAAGAAGTCCAAGCTCAAGGATTGCGgtaaggacacaccttgccacttttcttgttttatttatttgcacttcattcaatttgtgatttttgtttcccg-tctagttagttagtcagttaattagtc----
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GTGCCCCTCTCCGCCGTGCTCGACGCCGACAACCGCTCGCTCGGGACGCAGTGGTACCAGCTGCTGCCCAAGAGCAAGAAGTCCAAGATCAAGGATTACGgtaaattcatggcacccccccccccccctaatgttatcttgagttc--ttgaatttgc---ccttgtttcaagatatgaaaaggtattatgctgctgttttgcaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71332477|gb|DR803200.1|DR803200EST: GTGGTACCAACTGCAGCCCAAGAGCAAGAAGTCCAAGCTCAAGGATTGCG GAGAAATTCGTCTCAACGTTTCTCTGGCTCAAAACTACTCTGAAGAAGAGA
genomic: GTGGTACCAACTGCAGCCCAAGAGCAAGAAGTCCAAGCTCAAGGATTGCGgtaaggacac ... gcttttgtagGAGAAATTCGTCTCAACGTTTCTCTGGCTCAAAACTACTCTGAAGAAGAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGCCCCTCACCGCCGTGCTCGACGCCGACAACCGCACGCTCGGAACGCAGTGGTACCAACTGCAGCCCAAGAGCAAGAAGTCCAAGCTCAAGGATTGCGgtaaggacacaccttgccacttttcttgttttatttatttgcacttcattcaatttgtgatttttgtttcccgtctagttagttagtcagttaattagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA