1 5' 3' | 2 5' 3' | 3 5' 3' |
CACGGGCTTCCAGACGCGGGGCTCCTACCTCTTCGGCCACTTCAGCATGCACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttacatacgagctcctctcctgcctcctatctctaccacctcgctcttgccggcttgtatgtaacaacgtatctgactggtggccggccggctcgctctatctgcag
species | Zea mays |
transcript | GRMZM2G004699_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|33467747|gb|CF244796.1|CF244796
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|9255437|gb|BE345905.1|BE345905
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|71439011|gb|DR820061.1|DR820061
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|22546122|gb|BU098443.1|BU098443
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|22819448|gb|BU499538.1|BU499538
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|211298985|gb|FL169197.1|FL169197
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|89761345|gb|DY689393.1|DY689393
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|29130857|gb|CB381561.1|CB381561
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|211298983|gb|FL169195.1|FL169195
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|23357642|gb|BU645291.1|BU645291
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|211298979|gb|FL169191.1|FL169191
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|50326237|gb|CO521363.1|CO521363
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|211296845|gb|FL169184.1|FL169184
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|37421332|gb|CF648364.1|CF648364
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTAC-AGTTCCTGGGEST: gi|211296849|gb|FL169188.1|FL169188
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTT-CGAGTTCCTGGG
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|211298984|gb|FL169196.1|FL169196
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|26456139|gb|CA827722.1|CA827722
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|60343742|gb|DN210715.1|DN210715
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|22133536|gb|BQ833767.1|BQ833767
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|211298980|gb|FL169192.1|FL169192
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|22546396|gb|BU098707.1|BU098707
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|37423229|gb|CF649341.1|CF649341
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|211298986|gb|FL169198.1|FL169198
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCKTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGGAGCACGACGAGATCGACEST: gi|148936701|gb|EC880831.2|EC880831
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGG-AGCACGACGAGATCGAC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|76018116|gb|DT945286.1|DT945286
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|50329318|gb|CO524444.1|CO524444
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|211296847|gb|FL169186.1|FL169186
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|29130239|gb|CB380943.1|CB380943
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|148960072|gb|EE153316.2|EE153316
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCEST: gi|211296846|gb|FL169185.1|FL169185
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGGAGCACGACGAGATCGACTTCGAGTTCCTGGGEST: gi|211296836|gb|FL169175.1|FL169175
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGG-AGCACGACGAGATCGACTTCGAGTTCCTGGG
EST: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGGGCTTCCAGACGCGGGGCTCCTACCTCTTCGGCCACTTCAGCATGCACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttacatacgagctcctctcctgcctcctatctctaccacctcgctcttgccggcttgtatgtaacaacgtatctgactggtggccggccggctcgctctatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGGCGGCG