1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAGCTACGTCGGGCCGCGCCGCCGGTGGCGCGCCGCGGCAGCCTCGTCTTCGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccgaggggcagtccgcagcaccggttttctgattggttagcaagcaatctgattagctgatacatttgggttggatgctgctgcag
species | Zea mays |
transcript | GRMZM2G004352_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|50329898|gb|CO525024.1|CO525024
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|211212631|gb|FL412327.1|FL412327
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|148954649|gb|EC900096.2|EC900096
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|149084909|gb|EE174419.2|EE174419
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|211463633|gb|FL380567.1|FL380567
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|211057978|gb|FL426568.1|FL426568
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|211087785|gb|FL400777.1|FL400777
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|76010526|gb|DT937696.1|DT937696
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|71313543|gb|DR793346.1|DR793346
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|211403691|gb|FL424169.1|FL424169
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|211110152|gb|FL388603.1|FL388603
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|211493014|gb|FL369799.1|FL369799
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|37417290|gb|CF646298.1|CF646298
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|149100298|gb|EE186363.2|EE186363
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|211472091|gb|FL427745.1|FL427745
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|148930743|gb|EC873038.2|EC873038
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|71317339|gb|DR795363.1|DR795363
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGAEST: gi|91872113|gb|EB402070.1|EB402070
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
EST: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAG AAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
genomic: CGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccg ... gctgctgcagAAAAGCAGCGATGATGTTAGGCAGGCGCTGGACCAGCTGAGAGAGAGCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTACGTCGGGCCGCGCCGCCGGTGGCGCGCCGCGGCAGCCTCGTCTTCGGCGGCGTCCGGGGTGGACCTCAAAGCGCTGCAGGCCGCCATCGATAAGgtgagcgccgaggggcagtccgcagcaccggttttctgattggttagcaagcaatctgattagctgatacatttgggttggatgctgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG