Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGACGAGCGCTCGTCGGCGACGGCCGCCGTGAAGGCCAAGATCTACCGCATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccggacctcaactcctcatcctcaagcctcttctccgatctccactagagggccttcgtcttgtttggtctttatagagatgagatccaaccgc...

Basic information

species Zea mays
transcript GRMZM2G004349_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004349_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g45050.2 (Oryza sativa), 5'ss of exon 1
GACGACGAGCGCTCGTCGGCGACGGCCGCCGTGAAGGCCAAGATCTACCGCATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaag-cccggacctcaa--ctcctcatcctcaagcctcttctccgatctc-cactagagggccttcgtcttgtttggtctttatagagatgagatccaaccgc
   |||     |  |  |  |||||||| | |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||  | || ||  ||| |  ||         | |||  | |||  |    | |    | || |    | ||  |||     | |  | |    | | 
TCGGACTCCGACGGGGAGAGGACGGCCGACTTGAAGGCCAAGATCTACCGCCTCTTCGGCCGCGAGAAGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagacccaaagcttaaagctctttttcgcttgtaggcgtctgtgttcttgcgagcgtgtagatccgaccgcatcggggttttc---gctccgctttttctg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30306983|gb|CD001656.1|CD001656
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211532251|gb|FL240253.1|FL240253
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211535240|gb|FL240256.1|FL240256
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211135570|gb|FL257238.1|FL257238
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         -GKCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211538248|gb|FL240274.1|FL240274
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211538249|gb|FL240275.1|FL240275
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAG-                         CSGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|32913134|gb|CF017946.1|CF017946
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|76933464|gb|DV173471.1|DV173471
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|26559591|gb|CA831826.1|CA831826
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|149026779|gb|EE046142.2|EE046142
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211538246|gb|FL240272.1|FL240272
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211535247|gb|FL240263.1|FL240263
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211538250|gb|FL240276.1|FL240276
EST:     CATCTTCGGGCGCGAKAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         -G-CCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211115304|gb|FL172236.1|FL172236
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|22715413|gb|BU197749.1|BU197749
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|30307151|gb|CD001824.1|CD001824
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211535241|gb|FL240257.1|FL240257
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|78115575|gb|DV533963.1|DV533963
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211134636|gb|FL257232.1|FL257232
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|24773135|gb|CA408389.1|CA408389
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211134635|gb|FL257231.1|FL257231
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|34391153|gb|CF384381.1|CF384381
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211538255|gb|FL240281.1|FL240281
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         -GGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211134630|gb|FL257226.1|FL257226
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211137966|gb|FK978944.1|FK978944
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAASS                         -GGCCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTC
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCC-GATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTC
EST: gi|211137036|gb|FK978936.1|FK978936
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|149067456|gb|EE157665.2|EE157665
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211535244|gb|FL240260.1|FL240260
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         SGCCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|87156428|gb|DY401217.1|DY401217
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211532247|gb|FL240249.1|FL240249
EST:     CATCTTCGGGCGCGAGAWGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         -GGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211134640|gb|FL257236.1|FL257236
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         -GGNCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTC
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGG-CCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTC
EST: gi|211535252|gb|FL240268.1|FL240268
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211538256|gb|FL240282.1|FL240282
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|148931531|gb|EC874584.2|EC874584
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211137965|gb|FK978943.1|FK978943
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|71438089|gb|DR819139.1|DR819139
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211134639|gb|FL257235.1|FL257235
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|71435537|gb|DR816587.1|DR816587
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|67015492|gb|CO444241.1|CO444241
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|14203412|gb|BG837089.1|BG837089
EST:     CCGTCCTCGGCGGC-GCAAGC                         CGGCCGATCTGTTCCTATGGAGGAACAAGAGGATCTCTTGTGGGGTGCTCG
genomic: CCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211134632|gb|FL257228.1|FL257228
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         SGNCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|149000371|gb|EE037535.2|EE037535
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211535243|gb|FL240259.1|FL240259
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|31612033|gb|CD568655.1|CD568655
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGTTGTGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|24934739|gb|CA452957.1|CA452957
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|148965338|gb|EC906111.2|EC906111
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|71764684|gb|DR962621.1|DR962621
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|71304053|gb|DR788148.1|DR788148
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211538253|gb|FL240279.1|FL240279
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211137033|gb|FK978933.1|FK978933
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211538251|gb|FL240277.1|FL240277
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|211137029|gb|FK978929.1|FK978929
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
EST: gi|26557842|gb|CA830077.1|CA830077
EST:     CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGC                         CGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG
genomic: CATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccgg ... aagcttgcagCGGCCGATCTGTTTCTATGGAGGAACAAGAGGATCTCTGGTGGGGTGCTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACGACGAGCGCTCGTCGGCGACGGCCGCCGTGAAGGCCAAGATCTACCGCATCTTCGGGCGCGAGAAGCCCGTGCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccggacctcaactcctcatcctcaagcctcttctccgatctccactagagggccttcgtcttgtttggtctttatagagatgagatccaaccgc

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