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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCCATGGCTCCCACGAGTACCACCAGGAGACGCTCGACAACCTGCACGCCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccccgccctcgcaatctccttaccttccttctcaatccccgcggtctcgtgctacggttcgcgatctgcgatacggtgttgtttccttacctt...

Basic information

species Zea mays
transcript GRMZM2G003883_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003883_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g16960.1 (Oryza sativa), 5'ss of exon 1
CTCCCATGGCTCCCACGAGTACCACCAGGAGACGCTCGACAACCTGCACGCCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccccgccctcg-caatctccttaccttccttctcaatccccgcggtctcgtgctacggttcgcgatctgcgatacggtgttgtttccttacctt---
|||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||||  |||||| |||||||||||||| |||||||||||||||||||    |  | |  |      |||| | ||| ||| ||| ||| |   | |    |  | |  |||  |||||    | |    ||| | |   |  |    
CTCCCACGGATCCCACGAGTACCACCAGGAGACGCTCGACAACCTCCGCGCCGCCATGGAGAGCACCGGCATCCTCTGCGCCGTCATGCTCGACACCAAGgtcccattcgtgtctccaatcccctccctgcctccctcctcgatctctcggtttaatttttcctcttcttgatctattgttc----ttgatccgcaatttaagg

upper sequence: GRMZM2G003883_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA20G02980.1 (Glycine max), 5'ss of exon 1
CTCCCATGGCTCCCACGAGTACCACCAGGAGACGCTCGACAACCTGCACGCCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccccgccctcgcaatctccttaccttccttctcaatccccgcggtctcgtgctacggttcgcgatctgcgatacggtgttgtttccttacctt-------
||||||||| |||||||||||||||||||| || ||||||||||| | |||||||||||||  |||||| || ||||||||||| ||||||||||||||||  |    |  | || |   ||    ||  | |  | |  | || ||     ||  |  | || || |  || |    ||     || | | || | |         
CTCCCATGGGTCCCACGAGTACCACCAGGAAACCCTCGACAACCTCCGCGCCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgatac--gaccaccagattcgattttcatattccatattctcc----cctttttgttcgatttgt-atttattttatttatttatattctcatcgccgatttt

upper sequence: GRMZM2G003883_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G35110.1 (Glycine max), 5'ss of exon 1
CTCCCATGGCTCCCACGAGTACCACCAGGAGACGCTCGACAACCTGCACGCCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccccgccctcgcaatctccttaccttccttctcaatccccgcggtctcgtgctacggttcgcgatctgcgatacggtgttgtttccttacctt---
||||||||| |||||||||||||||||||| || ||||||||||| | |||||||||||||  |||||| || ||||||||||| ||||||||||||||||  |   |||| ||    |  | |  | |  |||  || |  |       |  | ||| |    ||     |||      || | |||||| |||   ||   
CTCCCATGGGTCCCACGAGTACCACCAGGAAACCCTCGACAACCTCCGCGCCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGg--cacgccccaccagatctgtttt-tcatattctctcccctttttgtttgatttgtgtttatatttatattctcatcgccgattttgttttctttgtttata

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30087097|gb|CB885305.1|CB885305
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|76019789|gb|DT946959.1|DT946959
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|50329421|gb|CO524547.1|CO524547
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|91055016|gb|EB165434.1|EB165434
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|76021509|gb|DT948679.1|DT948679
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|22473218|gb|BU037698.1|BU037698
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTCGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|76020987|gb|DT948157.1|DT948157
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|14883466|gb|BI273361.1|BI273361
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTCGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|32844860|gb|CD984541.1|CD984541
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|61119601|gb|DN560562.1|DN560562
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|149095073|gb|EE180677.2|EE180677
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|13490817|gb|BG517581.1|BG517581
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|149064623|gb|EE286495.2|EE286495
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|87155882|gb|DY400671.1|DY400671
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTCGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|211533540|gb|FL409969.1|FL409969
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTCGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|74241980|gb|DT649894.1|DT649894
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|211455949|gb|FL376154.1|FL376154
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGAT
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGAT
EST: gi|211453811|gb|FL376132.1|FL376132
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTG
EST: gi|5268384|gb|AI770348.1|AI770348
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTCGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|71444807|gb|DR825857.1|DR825857
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|13126458|gb|BG317028.1|BG317028
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGCAGATTAGCAACTGGATTTTTGAAAGATGGGAAGCCTATTCAAT
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAG-AGATTAG-AACTGGATTTTTGAAAGATGGGAAGCCTATTCAAT
EST: gi|148999358|gb|EE036297.2|EE036297
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|211449444|gb|FL371196.1|FL371196
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGA
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGA
EST: gi|211011412|gb|FL395338.1|FL395338
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATT
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATT
EST: gi|211275660|gb|FL423578.1|FL423578
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCMGAGATTAGAACTGGATTTTTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTG
EST: gi|71428103|gb|DR809153.1|DR809153
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|148961214|gb|EE011929.2|EE011929
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|101382630|gb|EB813369.1|EB813369
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|211514162|gb|FL413847.1|FL413847
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGYCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|101391373|gb|EB817621.1|EB817621
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|32844510|gb|CD984191.1|CD984191
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|148949039|gb|EC894462.2|EC894462
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|149070441|gb|EE158842.2|EE158842
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|211209138|gb|FL374135.1|FL374135
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|26559937|gb|CA832172.1|CA832172
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTCGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|211397662|gb|FL378751.1|FL378751
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGA
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGA
EST: gi|211493212|gb|FL377898.1|FL377898
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCT
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCT
EST: gi|211384593|gb|FL384006.1|FL384006
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|71431942|gb|DR812992.1|DR812992
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|149098964|gb|EE184977.2|EE184977
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|211317760|gb|FL419316.1|FL419316
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|148947157|gb|EC892475.2|EC892475
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTG
EST: gi|211085620|gb|FL417832.1|FL417832
EST:     CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAG                         GGTCCAGAGATTAGAACTGGATTT
genomic: CCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 147

CTCCCATGGCTCCCACGAGTACCACCAGGAGACGCTCGACAACCTGCACGCCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTGATAAAAGGCCAAGAAATCACAATTTCTACAGACTATAGCATTCAGGGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 430

CTCCCATGGCTCCCACGAGTACCACCAGGAGACGCTCGACAACCTGCACGCCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTGATAAAAGGCCAAGAAATCACAATTTCTACAGACTATAGCATTCAGGGTG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 406

CTCCCATGGCTCCCACGAGTACCACCAGGAGACGCTCGACAACCTGCACGCCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTGATAAAAGGCCAAGAAATCACAATTTCTACAGACTATAGCATTCAGGGTG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 516

CTCCCATGGCTCCCACGAGTACCACCAGGAGACGCTCGACAACCTGCACGCCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccc ... tatattgcagGGTCCAGAGATTAGAACTGGATTTTTGAAAGATGGGAAGCCTATTCAATTGATAAAAGGCCAAGAAATCACAATTTCTACAGACTATAGCATTCAGGGTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCCCATGGCTCCCACGAGTACCACCAGGAGACGCTCGACAACCTGCACGCCGCCATGGAGCTCACCGGGATCCTCTGCGCCGTTATGCTCGACACCAAGgtccttcccccgccctcgcaatctccttaccttccttctcaatccccgcggtctcgtgctacggttcgcgatctgcgatacggtgttgtttccttacctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccccgc