1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTGGTCGAAGAGATGGACTCGGTCATGGCCGCCCCCGACTCGCCGCCGCAGACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatgccgcctagactaggcattccgtcgagcacgaccgtcacttgttgcttgcttgcgcttttcgctgacaagtggccgcccccccttgcttttcttttgtgtgtctgcttgccag
species | Zea mays |
transcript | GRMZM2G003565_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211476178|gb|FL255698.1|FL255698
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211087166|gb|FL255709.1|FL255709
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211087164|gb|FL255707.1|FL255707
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211087173|gb|FL255716.1|FL255716
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211476171|gb|FL255691.1|FL255691
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211473659|gb|FL255683.1|FL255683
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211089615|gb|FL255722.1|FL255722
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|93284107|gb|EB676371.1|EB676371
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|78087016|gb|DV515409.1|DV515409
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211089610|gb|FL255717.1|FL255717
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|148935778|gb|EC879820.2|EC879820
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211087162|gb|FL255705.1|FL255705
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211087160|gb|FL255703.1|FL255703
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211471124|gb|FL255668.1|FL255668
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211471130|gb|FL255674.1|FL255674
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211473652|gb|FL255676.1|FL255676
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|76935832|gb|DV174484.1|DV174484
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211473655|gb|FL255679.1|FL255679
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211087168|gb|FL255711.1|FL255711
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211471120|gb|FL255664.1|FL255664
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211476182|gb|FL255702.1|FL255702
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211476175|gb|FL255695.1|FL255695
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211471117|gb|FL255661.1|FL255661
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|50339533|gb|CO534659.1|CO534659
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211476169|gb|FL255689.1|FL255689
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211471128|gb|FL255672.1|FL255672
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211087171|gb|FL255714.1|FL255714
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211473662|gb|FL255686.1|FL255686
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|71446512|gb|DR827562.1|DR827562
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211473660|gb|FL255684.1|FL255684
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211471122|gb|FL255666.1|FL255666
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|78082974|gb|DV511367.1|DV511367
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211473663|gb|FL255687.1|FL255687
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCCEST: gi|211471123|gb|FL255667.1|FL255667
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
EST: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCA CGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
genomic: GACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatg ... tgcttgccagCGGGCAATGTCCTGTGCTCGTGGGGCAGGGGCGAGGACGGGCAGCTCGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGTCGAAGAGATGGACTCGGTCATGGCCGCCCCCGACTCGCCGCCGCAGACTGTCGTGCTCGTCTCTGCCGGCGCCAGCCACTCCGTCGCGCTCCTCAgtaagccatgccgcctagactaggcattccgtcgagcacgaccgtcacttgttgcttgcttgcgcttttcgctgacaagtggccgcccccccttgcttttcttttgtgtgtctgcttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC