1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCATTTCATGGTAATATAGAATCATCGCCATGCTTGAGAAGACCGGGACTCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAGgtagacttgaatgaaacaatatacaaattatctattttgtaccaattctaaccagtgatgctctcctcttcttcaacgacatactag
species | Zea mays |
transcript | GRMZM2G003096_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAG GGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCATEST: gi|50334525|gb|CO529651.1|CO529651
genomic: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCAT
EST: GGGTTGAAAGTTATTCGTAAAG GGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCATEST: gi|211439718|gb|FL188856.1|FL188856
genomic: GGGTTGAAAGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCAT
EST: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAG GGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCATEST: gi|211439719|gb|FL188857.1|FL188857
genomic: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCAT
EST: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAG GGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCATEST: gi|89249663|gb|DY621449.1|DY621449
genomic: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCAT
EST: AGTTATTTGTAAAG GGCAAGTAATGTTTTCTATATCCCCTCAAGAACATTATTTTTGACTGCCCAEST: gi|211439720|gb|FL188858.1|FL188858
genomic: AGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTA-TTTTGACTGCCCA
EST: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTGGRG GGCAAGTAATGTTCTCTATATCCCCATCAAGAACATTATTTTGACTGCCCAEST: gi|211439721|gb|FL188859.1|FL188859
genomic: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCC-TCAAGAACATTATTTTGACTGCCCA
EST: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAG GGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCATEST: gi|211537751|gb|FL446842.1|FL446842
genomic: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCAT
EST: TAAAAATGGCAAATGTGGGAGATTGGTGGG-TGAAAGTTATTCGTAAAAG GGCAAGTAATGTTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCC
genomic: TAAAAATTGCAAGTGTGGGAGATT-GTGGGTTGAAAGTTATTCGT-AAAGgtagacttga ... gacatactagGGCAAGTAATG-TTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCATTTCATGGTAATATAGAATCATCGCCATGCTTGAGAAGACCGGGACTCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAGgtagacttgaatgaaacaatatacaaattatctattttgtaccaattctaaccagtgatgctctcctcttcttcaacgacatactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT