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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACTGCTTCCCGCCTCTCGCCCCCGCGCTTCAGCACCCCTTCCCCGTCTCTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAAgtacggccgtctttgcccccccgcgcgtctgccttgactctgttgctcggatattctcagatgtctggggaggctggagtaatgtttgcatcactaattt...

Basic information

species Zea mays
transcript GRMZM2G003096_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003096_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g07090.1 (Oryza sativa), 5'ss of exon 1
CCACTGCTTCCCGCCTCTCGCCCCCGCGCTTC--AGCACCC-CTTCCCCGTCTCTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAAgtacggccgtctttgcccccccgcgcgtctgccttgactctgttgctcggatattctcagatgtctggggaggctggagtaatgtttgcatcactaattt--
   ||||| ||||||||||||| || ||| ||   |||||| || |||| ||||  ||||  ||    ||||||||||||||||||||| ||||||| |||||||| | |   ||     | || |  ||     |||  || ||    |  ||||   |     |||   | |   |   ||  | |     || |   ||   
---CTGCTACCCGCCTCTCGCCGCCTCGCCTCCACGCACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCGCCGCCAAgtatgcctccctgcttacacctgttcgatcctcttatctttgcccttacgataagtttca--gtccacgaaatgttcggttttatcgaattctcgggttcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50334526|gb|CO529652.1|CO529652
EST:     CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAA                         GTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAA
genomic: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAAgtacggccgt ... gtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAA
EST: gi|89249664|gb|DY621450.1|DY621450
EST:     CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAA                         GTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAA
genomic: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAAgtacggccgt ... gtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAA