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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGGACTGGTGGCGCGACGTCAACGAGTCGCCGCTGTGGCAGGACCGCATATTTCACGCGCTCGCCGTGCTCTACGGCATCGTCTCGGCCGTCGCGCTGgtaagcaccctcccgcgcccgcttcgcttccctgacccttgtctggtccgatctatcagaatttcccgatcagatgggattttctgtcggtttcggttgg...

Basic information

species Zea mays
transcript GRMZM2G003076_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003076_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g39220.1 (Oryza sativa), 5'ss of exon 1
CGTGGACTGGTGGCGCGACGTCAACGAGTCGCCGCTGTGGCAGGACCGCATATTTCACGCGCTCGCCGTGCTCTACGGCATCGTCTCGGCCGTCGCGCTGgtaagcaccctcccgcgcccg--cttcgcttccctgaccctt-------gtctggtccgatctatcagaatttcccgatcagatgggattttctgtcggtttcggttgg
 |||||||||||||||||||| |||||||||||| |||||||||||||||| || ||||  ||||| | |||||||||| ||||||| ||| ||||||||||| || ||| ||  |  ||   ||||  || | | ||  |        |   | || |||   ||||   |  | | |  ||| || |||||| |   |         
GGTGGACTGGTGGCGCGACGTGAACGAGTCGCCGGTGTGGCAGGACCGCATCTTCCACGTCCTCGCGGCGCTCTACGGCTTCGTCTCCGCCATCGCGCTGgtaggcgcccgccaccctccacccttccattacgttacgatctgtggaggctggatctgattgctcagtggtatctgttttgattgggttttcttttttt---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211382284|gb|FL169263.1|FL169263
EST:     TATTTCACGCGCTCGCCGTGCTCTACGGCATCGTCTCGGCCGTCGCGCTG                         GTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACG
genomic: TATTTCACGCGCTCGCCGTGCTCTACGGCATCGTCTCGGCCGTCGCGCTGgtaagcaccc ... tctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACG
EST: gi|149112231|gb|EE295139.2|EE295139
EST:     TATTTCACGCGCTCGCCGTGCTCTACGGCATCGTCTCGGCCGTCGCGCTG                         GTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACG
genomic: TATTTCACGCGCTCGCCGTGCTCTACGGCATCGTCTCGGCCGTCGCGCTGgtaagcaccc ... tctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACG
EST: gi|149081139|gb|EE170248.2|EE170248
EST:     TATTTCACGCGCTCGCCGTGCTCTACGGCATCGTCTCGGCCGTCGCGCTG                         GTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACG
genomic: TATTTCACGCGCTCGCCGTGCTCTACGGCATCGTCTCGGCCGTCGCGCTGgtaagcaccc ... tctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACG
EST: gi|149109085|gb|EE189999.2|EE189999
EST:     TATTTCACGCGCTCGCCGTGCTCTACGGCATCGTCTCGGCCGTCGCGCTG                         GTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACG
genomic: TATTTCACGCGCTCGCCGTGCTCTACGGCATCGTCTCGGCCGTCGCGCTGgtaagcaccc ... tctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACG