1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCTTTATTTCCACCGACGCCGCCGGCGCCGACTCGTCGTCGCCCGGCATGCGCCTTCTGCCAGCGGGGGAGCACGGCGGCGGCCATGCATACGGCGAACAgtgagtacatatatgcatgtgcatgaccttatagcaaacgacgatgatctctagccatcgcatatgctgctcgatcgctgtgaaaatcgtgcagaggttaacataacaaacgacggccggtctatatatgcttgcag
species | Zea mays |
transcript | GRMZM2G002627_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCCTTCTGCCAGCGGGGGAGCACGGCGGCGGCCATGCATACGGCGAACA AAGCAACATCACATGCTACAAGGAGAACTTCCTCGACCTGCTCGCGTCGAAEST: gi|148965838|gb|EE016733.2|EE016733
genomic: CGCCTTCTGCCAGCGGGGGAGCACGGCGGCGGCCATGCATACGGCGAACAgtgagtacat ... atgcttgcagAAGCAACATCACATGCTACAAGGAGAACTTCCTCGACCTGCTCGCGTCGAA
EST: CGCCTTCTGCCAGCGGGGGAGCACGGCGGCGGCCATGCATACGGCGAACA AAGCAACATCACATGCTACAAGGAGAACTTCCTCGACCTGCTCGCGTCGAAEST: gi|74240293|gb|DT648207.1|DT648207
genomic: CGCCTTCTGCCAGCGGGGGAGCACGGCGGCGGCCATGCATACGGCGAACAgtgagtacat ... atgcttgcagAAGCAACATCACATGCTACAAGGAGAACTTCCTCGACCTGCTCGCGTCGAA
EST: CGCCTTCTGCCAGCGGGGGAGCACGGCGGCGGCCATGCATACGGCGAACA AAGCAACATCACATGCTACAAGGAGAACTTCCTCGACCTGCTCGCGTCGAAEST: gi|211318165|gb|FL216123.1|FL216123
genomic: CGCCTTCTGCCAGCGGGGGAGCACGGCGGCGGCCATGCATACGGCGAACAgtgagtacat ... atgcttgcagAAGCAACATCACATGCTACAAGGAGAACTTCCTCGACCTGCTCGCGTCGAA
EST: CGCCTTCTGCCAGCGGGGGAGCACGGCGGCGGCCATGCATACGGCGAACA AAGCAACATCACATGCTACAAGGAGAACTTCCTCGACCTGCTCGCGTCGAA
genomic: CGCCTTCTGCCAGCGGGGGAGCACGGCGGCGGCCATGCATACGGCGAACAgtgagtacat ... atgcttgcagAAGCAACATCACATGCTACAAGGAGAACTTCCTCGACCTGCTCGCGTCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTTATTTCCACCGACGCCGCCGGCGCCGACTCGTCGTCGCCCGGCATGCGCCTTCTGCCAGCGGGGGAGCACGGCGGCGGCCATGCATACGGCGAACAgtgagtacatatatgcatgtgcatgaccttatagcaaacgacgatgatctctagccatcgcatatgctgctcgatcgctgtgaaaatcgtgcagaggttaacataacaaacgacggccggtctatatatgcttgcag
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