Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTCTGGTTCGACAACCCGCAGAGCAAGTCCAAGCAGGCCGCCTGGGGGAGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcattctcttcagattcgccctccctcgtccttctatcctcttcccctgatcgcatcccactgtttctcttttccgttacaaatcctccgaccg...

Basic information

species Zea mays
transcript GRMZM2G002616_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G002616_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g73880.1 (Oryza sativa), 5'ss of exon 1
CCTTCTGGTTCGACAACCCGCAGAGCAAGTCCAAGCAGGCCGCCTGGGGGAGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcattctcttcagattcgccctccctcgtccttctatcctcttcccctgatcgcatcccactgtttctcttttccgttacaaatcctccgaccg
||||||||||||||||||||||| | ||||||||||||||  ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |||         | | ||   |||     |||||  |   || |||    |      ||      || | ||     || ||  |  |  |  |    |||
CCTTCTGGTTCGACAACCCGCAGGGAAAGTCCAAGCAGGCAACCTGGGGAAGCTCCATCCGCCCCATCCACACCTTCTCCACCGTCGAGGACTTCTGGAGgtttcccaccccccctcctcttcttttcccctccacaacctctccatcccttgccttcatgaatcagtattgtagattccccatctagctgtttaacccg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60349185|gb|DN216158.1|DN216158
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211305231|gb|FL056011.1|FL056011
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|30306554|gb|CD001227.1|CD001227
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|7145252|gb|AW506733.1|AW506733
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211425449|gb|FL011474.1|FL011474
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|71447984|gb|DR829034.1|DR829034
EST:     GCTCCATCCGCCCCATACACTCCCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACGATAACATTAATCACCCTAGCACATTGA
genomic: GCTCCATCCGCCCCATACACACC-TTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGA
EST: gi|110195701|gb|EC877598.1|EC877598
EST:     TTCCATCCGCCCCCATACCACACCTTTTCCACGGTGGGGGAATTGTGGGG                         GCTTTGCAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: CTCCATCCG-CCCCATA-CACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211425445|gb|FL011470.1|FL011470
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGNGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|42492011|gb|CK701057.1|CK701057
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|29947472|gb|CB816674.1|CB816674
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|60359494|gb|DN226467.1|DN226467
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211307252|gb|FL056026.1|FL056026
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATNACCCTAGCAAATTGATCGNGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211307241|gb|FL056015.1|FL056015
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|9732665|gb|BE511417.1|BE511417
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|78544202|gb|DV621700.1|DV621700
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211428038|gb|FL011482.1|FL011482
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|32828562|gb|CD968240.1|CD968240
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211425441|gb|FL011466.1|FL011466
EST:     GCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATT
genomic: GCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATT-CTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATT
EST: gi|211309272|gb|FL056031.1|FL056031
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|20336959|gb|BQ172589.1|BQ172589
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGGATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|91053164|gb|EB163582.1|EB163582
EST:     GGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: GGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|60346333|gb|DN213306.1|DN213306
EST:     TCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: TCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|44900742|gb|CK827287.1|CK827287
EST:     CACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: CACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211428031|gb|FL011475.1|FL011475
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|29577092|gb|CB617204.1|CB617204
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|71447985|gb|DR829035.1|DR829035
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|60398596|gb|DN231412.1|DN231412
EST:     GCTCCATCCGCCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: GCTCCATCCG-CCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211428036|gb|FL011480.1|FL011480
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211235178|gb|FL451436.1|FL451436
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|50334083|gb|CO529209.1|CO529209
EST:     AGCTCCATCCGCCCCATACGCACCTTCTCCACCGTCGAGGAATTCGGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211425440|gb|FL011465.1|FL011465
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211425442|gb|FL011467.1|FL011467
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211307243|gb|FL056017.1|FL056017
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211428037|gb|FL011481.1|FL011481
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|148968177|gb|EE019467.2|EE019467
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|60353078|gb|DN220051.1|DN220051
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|60355408|gb|DN222381.1|DN222381
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|213175369|gb|FM190157.1|FM190157
EST:     GGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: GGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211235179|gb|FL451437.1|FL451437
EST:     ATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: ATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|213178516|gb|FM182938.1|FM182938
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|32858290|gb|CD997971.1|CD997971
EST:     ATACACACCTTCTCCACGGGGGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: ATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211425443|gb|FL011468.1|FL011468
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211425444|gb|FL011469.1|FL011469
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGKAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|211428032|gb|FL011476.1|FL011476
EST:     AGCTCCATCCGCCCAATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|26456542|gb|CA828125.1|CA828125
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|37394065|gb|CF634302.1|CF634302
EST:     GCTCCATCGCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: GCTCCATC-CGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|149089128|gb|EE178311.2|EE178311
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|149078569|gb|EE167354.2|EE167354
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|148928878|gb|EC873836.2|EC873836
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|91053165|gb|EB163583.1|EB163583
EST:     GGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: GGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
EST: gi|148933696|gb|EC877599.2|EC877599
EST:     AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGG                         GCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT
genomic: AGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 321

CCTTCTGGTTCGACAACCCGCAGAGCAAGTCCAAGCAGGCCGCCTGGGGGAGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTTCCATTGCTTCAAGAACAAGATCGAGCCAAAATGGGAAGACCCTATTTGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 205

CCTTCTGGTTCGACAACCCGCAGAGCAAGTCCAAGCAGGCCGCCTGGGGGAGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTTCCATTGCTTCAAGAACAAGATCGAGCCAAAATGGGAAGACCCTATTTGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 227

CCTTCTGGTTCGACAACCCGCAGAGCAAGTCCAAGCAGGCCGCCTGGGGGAGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTTCCATTGCTTCAAGAACAAGATCGAGCCAAAATGGGAAGACCCTATTTGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 91

CCTTCTGGTTCGACAACCCGCAGAGCAAGTCCAAGCAGGCCGCCTGGGGGAGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcat ... gctttactagGCTTTACAATAACATTAATCACCCTAGCAAATTGATCGTGGGAGCTGATTTCCATTGCTTCAAGAACAAGATCGAGCCAAAATGGGAAGACCCTATTTGT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTTCTGGTTCGACAACCCGCAGAGCAAGTCCAAGCAGGCCGCCTGGGGGAGCTCCATCCGCCCCATACACACCTTCTCCACCGTCGAGGAATTCTGGGGgtgcgttcattctcttcagattcgccctccctcgtccttctatcctcttcccctgatcgcatcccactgtttctcttttccgttacaaatcctccgaccg

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