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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGTGGCTCTGGCGGGGGTGGAGAGGCGGCGGCCGGAGGCGGCGTCGCTCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttacagtccctgtgcgtggctcgtgagcagcggcagcgcatcgtgcttgtagattttttcttggatggtgctgcatgtatagagttgttaagga...

Basic information

species Zea mays
transcript GRMZM2G002440_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211486479|gb|FL110811.1|FL110811
EST:     TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|50328195|gb|CO523321.1|CO523321
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211483602|gb|FL110803.1|FL110803
EST:     TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211159401|gb|FL365678.1|FL365678
EST:     TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211486475|gb|FL110807.1|FL110807
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211519817|gb|FL338576.1|FL338576
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|78085561|gb|DV513954.1|DV513954
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211543369|gb|FL321070.1|FL321070
EST:     TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTACGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211356792|gb|FL332225.1|FL332225
EST:     TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211021444|gb|FL345712.1|FL345712
EST:     TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAACCACCCGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211309955|gb|FL324302.1|FL324302
EST:     TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211483605|gb|FL110806.1|FL110806
EST:     TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211483601|gb|FL110802.1|FL110802
EST:     TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211486476|gb|FL110808.1|FL110808
EST:     TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|148953359|gb|EE152852.2|EE152852
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|8102608|gb|AW927411.1|AW927411
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211365235|gb|FL351459.1|FL351459
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTTYA
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTC-A
EST: gi|211281454|gb|FL334418.1|FL334418
EST:     TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|22473207|gb|BU037687.1|BU037687
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|78088183|gb|DV516576.1|DV516576
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211486478|gb|FL110810.1|FL110810
EST:     TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|74234070|gb|DT641984.1|DT641984
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211010679|gb|FL358969.1|FL358969
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211037801|gb|FL314005.1|FL314005
EST:     TCATGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|31358187|gb|CD442544.1|CD442544
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GGCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|5268619|gb|AI770583.1|AI770583
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211086851|gb|FL356798.1|FL356798
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCATG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|74240578|gb|DT648492.1|DT648492
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|87156524|gb|DY401313.1|DY401313
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|101394439|gb|EB819154.1|EB819154
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211483603|gb|FL110804.1|FL110804
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|67036127|gb|CO464098.1|CO464098
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|211486477|gb|FL110809.1|FL110809
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|26558683|gb|CA830918.1|CA830918
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|71325779|gb|DR799570.1|DR799570
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|148956597|gb|EC902445.2|EC902445
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
EST: gi|21843362|gb|BQ703943.1|BQ703943
EST:     TCCTGGGGGCGCCTGTGCTGGCTACGGCCGAAGCCTGCGCTTCGATCAAG                         GTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG
genomic: TCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttac ... ttacaagcagGTCATTCCTTTGTCGAATCAGCTGGCTCGATACTCGACAACTGCATTTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTGTGGCTCTGGCGGGGGTGGAGAGGCGGCGGCCGGAGGCGGCGTCGCTCCTGGGGGCGCCTGTGCTGGCTACGGTGGAAGCCTGCGCTTCGATCAAGgtggtgttacagtccctgtgcgtggctcgtgagcagcggcagcgcatcgtgcttgtagattttttcttggatggtgctgcatgtatagagttgttaagga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG