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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCCAACAGCGAGAGGGGATCCGAAATAATCAAGGCGAAGATCATGTCCCACCCACTCTATCCGGCTGTCTTGAGAGCCTTCATAGACTGCCGGAAGgtatgcgtgcagcagatttcctagagacatacaattctacagctaattttgccagagagcgaaagctagcatggcttcttgatttttttatgtgctagctccgtccttatatattattctccaatttttcatgaggaagttctcttttgtattttttttgttacttgag

Basic information

species Zea mays
transcript GRMZM2G002225_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G002225_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g47022.1 (Oryza sativa), 5'ss of exon 1
TGCTGCCAA-CAGCGAGAGGGGATCCGAAATAATCAAGGCGAAGATCATGTCCCACCCACTCTATCCGGCTGTCTTGAGAGCCTTCATAGACTGCCGGAAGgtatgcgtgcagcagatttcctagagacatacaattctacagctaattttgccagagagcgaaagctagcatggc--ttcttgatttttttatgtgctagctccgtccttatatattattctccaattttt-catgaggaagttctcttttgtattttttttgttacttgag
  |   |   |   ||||||| | | ||   |||||| || ||||||||||| ||||| ||||| |||||| || | |||||||||||||| |||| |||||||  |       | || | ||  |  | |   || |||     |    |||  | ||   | |     ||||||  || |||  | | ||      |   |   || |   || || || |  ||||| |   || |         |||||    |||| ||  || | ||
-ACAATCTTTCCATGAGAGGGAAACGGATGCAATCAAAGCCAAGATCATGTCGCACCCCCTCTACCCGGCTCTCCTCAGAGCCTTCATAGATTGCCAGAAGgtaaac------tatatatactgaattcctcacatcctaagcacacacatgcatgtgattaatataattcatggcaattgttgcctctctttcaaattcttttt-tcttcccatcttctttttgaatttatgtgtgtgtggaactggttttga---ttttgtgaaacctaag

upper sequence: GRMZM2G002225_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g47042.1 (Oryza sativa), 5'ss of exon 1
TGCTGCCAACAGCGAGAGGGGATCCGA---AATAATCAAGGCGAAGATCATGTCCCACCCACTCTATCCGGCTGTCTTGAGAGCCTTCATAGACTGCCGGAAGgtatgcgtgcagcagatttcctagagacatacaattctacagctaattttgccagagagcgaaagctagcatggcttcttgatttttttatgtgctagctccgtccttatatattattctccaatttttcatgaggaagttctcttttgtatt-ttttttgttacttgag
    | || | ||  |     ||| ||   ||| |||||||| ||||||||||| ||||| || |||||| || || ||||||||||| | ||||||  ||||||||         | |||      | | ||||     ||  ||   |||||                    ||| ||||    || | ||| |   |  ||| | |  | | ||| |       ||  |||||    | |||| | ||||| |  | | |||||      
---CGGCACCGGCCTGCAATCATCGGAAGCAATGATCAAGGCCAAGATCATGTCGCACCCTCTGTATCCGTCTCTCCTGAGAGCCTTCGTCGACTGCAAGAAGgtatat-------aaatt------atatatacg----taacgccgtttttgt-------------------tggtttctc---ttgtgtatatttaatttccatgcgaaaaaattgt------gttcgtcatgcattaattctttgttgtactactgtgtgttaag----