1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAGGTCTCGTACGGCGTTGTCAAGGACGAGAACGGCAACGTCAAGCTCGACTGCCCCGCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAGgtaacttgttatgttagaatggcagaccaaatgccctcagctggctccagtggtcggtgactggtggtgccatccgtaaggatggcaaaaataaacaaat...
species | Zea mays |
transcript | GRMZM2G001500_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACTGCCCCGCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAG GTTTTGAGGAAGTTGGTGGATGATGCATCTAAGTTTCTTAATGAGAAAATCEST: gi|148991802|gb|EE033383.2|EE033383
genomic: ACTGCCCCGCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAGgtaacttgtt ... atccgaacagGTTTTGAGGAAGTTGGTGGATGATGCATCTAAGTTTCTTAATGAGAAAATC
EST: CTGCCCCCGCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAG GTTTTGAGGAAGTTGGTGGATGATGCATCTAAGTTTCTTAATGAGAAAATCEST: gi|71431709|gb|DR812759.1|DR812759
genomic: CTGCCCC-GCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAGgtaacttgtt ... atccgaacagGTTTTGAGGAAGTTGGTGGATGATGCATCTAAGTTTCTTAATGAGAAAATC
EST: ACTGCCCCGCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAG GTTTTGAGGAAGTTGGTGGATGATGCATCTAAGTTTCTTAATGAGAAAATCEST: gi|149046466|gb|EE047987.2|EE047987
genomic: ACTGCCCCGCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAGgtaacttgtt ... atccgaacagGTTTTGAGGAAGTTGGTGGATGATGCATCTAAGTTTCTTAATGAGAAAATC
EST: ACTGCCCCGCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAG GTTTTGAGGAAGTTGGTGGATGATGCATCTAAGTTTCTTAATGAGAAAATCEST: gi|149108591|gb|EE292857.2|EE292857
genomic: ACTGCCCCGCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAGgtaacttgtt ... atccgaacagGTTTTGAGGAAGTTGGTGGATGATGCATCTAAGTTTCTTAATGAGAAAATC
EST: ACTGCCCCGCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAG GTTTTGAGGAAGTTGGTGGATGATGCATCTTAGTTTCTTAATGAGAAAATCEST: gi|60344518|gb|DN211491.1|DN211491
genomic: ACTGCCCCGCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAGgtaacttgtt ... atccgaacagGTTTTGAGGAAGTTGGTGGATGATGCATCTAAGTTTCTTAATGAGAAAATC
EST: ACTGCCCCGCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAG GTTTTGAGGAAGTTGGTGGATGATGCATCTAAGTTTCTTAATGAGAAAATC
genomic: ACTGCCCCGCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAGgtaacttgtt ... atccgaacagGTTTTGAGGAAGTTGGTGGATGATGCATCTAAGTTTCTTAATGAGAAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGGTCTCGTACGGCGTTGTCAAGGACGAGAACGGCAACGTCAAGCTCGACTGCCCCGCTATCGGCAAACAGTTCGCTGCCGAGGAGATCTCCGCGCAGgtaacttgttatgttagaatggcagaccaaatgccctcagctggctccagtggtcggtgactggtggtgccatccgtaaggatggcaaaaataaacaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC