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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGAAATGATGATCCCGGCGAGGCACATGCCGCCGACGATGATCGTCCGGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttgggcttggtgagatcagaagactgccttttagtttcatctctcttttctttgggaaaatcagaacacgttgttctcttgtttcttctgcgc...

Basic information

species Zea mays
transcript GRMZM2G001289_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149076628|gb|EE165266.2|EE165266
EST:     GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAG                         CCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
genomic: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttg ... ttgctcgcagCCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
EST: gi|78092032|gb|DV520406.1|DV520406
EST:     GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAG                         CCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
genomic: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttg ... ttgctcgcagCCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
EST: gi|149003857|gb|EE038975.2|EE038975
EST:     GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAG                         CCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
genomic: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttg ... ttgctcgcagCCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
EST: gi|33468080|gb|CF245129.1|CF245129
EST:     GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAG                         CCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
genomic: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttg ... ttgctcgcagCCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
EST: gi|76286374|gb|DV025942.1|DV025942
EST:     GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAG                         CCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
genomic: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttg ... ttgctcgcagCCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
EST: gi|71449408|gb|DR830458.1|DR830458
EST:     GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAG                         CCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
genomic: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttg ... ttgctcgcagCCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG