1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGGAGAAATGATGATCCCGGCGAGGCACATGCCGCCGACGATGATCGTCCGGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttgggcttggtgagatcagaagactgccttttagtttcatctctcttttctttgggaaaatcagaacacgttgttctcttgtttcttctgcgc...
species | Zea mays |
transcript | GRMZM2G001289_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAG CCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAGEST: gi|78092032|gb|DV520406.1|DV520406
genomic: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttg ... ttgctcgcagCCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
EST: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAG CCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAGEST: gi|149003857|gb|EE038975.2|EE038975
genomic: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttg ... ttgctcgcagCCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
EST: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAG CCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAGEST: gi|33468080|gb|CF245129.1|CF245129
genomic: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttg ... ttgctcgcagCCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
EST: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAG CCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAGEST: gi|76286374|gb|DV025942.1|DV025942
genomic: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttg ... ttgctcgcagCCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
EST: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAG CCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAGEST: gi|71449408|gb|DR830458.1|DR830458
genomic: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttg ... ttgctcgcagCCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
EST: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAG CCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
genomic: GGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttg ... ttgctcgcagCCGAACTTGATGGACAACCAGCAGCTCCAGTTCCAGCAAGCGTTGCAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGAAATGATGATCCCGGCGAGGCACATGCCGCCGACGATGATCGTCCGGAACGGCGGCGCGGCGTACGGGTCCTCGTCGGCACTGTCGCTCGGCCAGgtaatctttgggcttggtgagatcagaagactgccttttagtttcatctctcttttctttgggaaaatcagaacacgttgttctcttgtttcttctgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatca