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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGACTGGTTGATGCAATGTAGGAGGAGATTCACGAGCTGCTGCTGAGCTTTGCGGAGGCTGGTGCCAATGTTGTGCGCTTGAAAGGTGGCGATCCTCTGgtaatttgctgttgcttgcaaaactacttagtactaaaggattattgtggcacttccatttgttacccaagctcaatcaacaacgtcagacatttttttg...

Basic information

species Zea mays
transcript GRMZM2G000739_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000739_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g44050.1 (Oryza sativa), 5'ss of exon 2
ATGACTGGTTGATGCAATGTAGGAGGAGATTCACGAGCTGCTGCTGAGCTTTGCGGAGGCTGGTGCCAATGTTGTGCGCTTGAAAGGTGGCGATCCTCTGgtaatttgctgttgcttgcaaaactactta----gtactaaaggattattgtg-gcacttccatttgttacccaagctcaatcaacaacgtcagacatttttttg
                      || |||||||| |||||||| || ||||| || ||||||||||||||||| ||||| |||||||| ||||| |||||||||||   ||||| | || ||  | |||||    | ||    | |||    || ||||   | |      | |||  ||  |    |  ||   |    |||   
----------------------GAAGAGATTCATGAGCTGCTACTAAGCTTCGCAGAGGCTGGTGCCAATGTGGTGCGGTTGAAAGGCGGCGACCCTCTGgtaatacactgtt-catgtaatgcaacttatctaggacctgggaatttggctgtgcacgctcgtgcaa-gcacaacatctgttgctattgttt-atgcctttc--

upper sequence: GRMZM2G000739_T02 (Zea mays), 5'ss of exon 1
lower sequence: EDP02286 (Chlamydomonas reinhardtii), 5'ss of exon 3
---------------------------------ATGACTGGTTG----ATGCAATG-TAGGAGGAGATTCACGAGCTGCTGCTGAGCTTTGCGGAGGCTGGTGCCAATGTTGTGCGCTTGAAAG-GTGGCGATCCTCTGgtaatttgctgttgcttgcaaaactacttagtactaaaggattat---tgtggcacttccatttgttacccaagctcaatcaacaacgtcagacatttttttg
                                 | | |||| |     | ||   |  |||||||||| |||||||||||||||  ||| |||||||| ||||  | ||  |   ||  |   | | |  |    || || |      ||    | |     ||   | | | | |           |||||||  |  | |                                        
GGTCCGTCCGCGCGCATGGTGTACGTGGGCAAGACGGCTGGCTACCACACGCGGCGGCAGGAGGAGATCCACGAGCTGCTGCTGGCCTTCGCGGAGGCGGgtg--agtgacggatgcgggggtgcgggaggggagtcaggcacccaaatgggcgtgggcgggctggatggcaatgagtaggcgcgcgtgtggcagctggact----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78090157|gb|DV518531.1|DV518531
EST:     TTGCGGAGGCTGGTGCCAATGTTGTGCGCTTGAAAGGTGGCGATCCTCTG                         GTTTTTGGAAGGGGTGGAGAAGAGATGGATTTCTTACAGCAACAGGGAATC
genomic: TTGCGGAGGCTGGTGCCAATGTTGTGCGCTTGAAAGGTGGCGATCCTCTGgtaatttgct ... ttcctttcagGTTTTTGGAAGGGGTGGAGAAGAGATGGATTTCTTACAGCAACAGGGAATC